[1] "2025-04-29 23:39:45 MDT" [1] "1504" "150415" "d105" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150415a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:39:49 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.845, ave o2scale2 = 0.761" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "54 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.845, ave o2scale2 = 0.761" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "54 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:39:49 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:39:49 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:40:11 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:40:12 MDT" [1] "reading in recalculated plot titles" [1] "Removed 54 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1382 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:40:17 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.953 co2off = 397.19 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.81 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 9.06 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 49 55 0.03505773 0.04131719 0.03992589 3 -32.892880 272.0303 3 4 56 65 0.04201273 0.04827185 0.04583770 3 -3.913242 122.9174 4 3 66 75 0.04896725 0.05522685 0.05418350 3 -15.385312 215.9885 6 4 318 327 0.24375830 0.25001811 0.24758375 2 -3.896367 119.9017 7 2 328 333 0.25280787 0.25698090 0.25593778 2 -32.865213 271.3563 9 2 599 608 0.45247457 0.45873417 0.45630012 3 -32.899961 271.3604 10 4 609 618 0.45942957 0.46572118 0.46327085 3 -3.906625 123.3954 11 5 619 628 0.46642133 0.47271019 0.47166594 NA -14.766719 185.0458 12 3 629 638 0.47340567 0.47966493 0.47862180 3 -15.367812 189.3626 14 4 897 906 0.66121617 0.66747920 0.66504299 2 -3.991805 120.9694 15 2 907 916 0.66817477 0.67443411 0.67200002 2 -32.996141 270.0816 17 2 1196 1205 0.86988565 0.87614499 0.87371079 3 -33.053953 265.5575 18 4 1206 1215 0.87684060 0.88309965 0.88066567 3 -4.065156 124.6068 19 3 1216 1225 0.88379523 0.89005486 0.88901193 3 -15.549727 212.9600 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.186248 1.318038 0.0016335688 1.1337838 0.003845011 3.2419736 3 1.186176 1.317888 0.0004866667 -0.3742753 0.004752635 1.7131600 4 1.186314 1.318045 0.0002214404 -0.1249558 0.002301737 0.8686565 6 1.188430 1.320319 -0.0007659485 -0.3486202 0.004088371 2.5938725 7 1.189050 1.321018 -0.0007689265 -0.9046223 0.001300401 1.2087145 9 1.187205 1.319107 -0.0005966010 0.2407425 0.002179690 1.5675867 10 1.187048 1.318958 0.0022097553 -0.3127606 0.005975770 1.8745224 11 1.187051 1.318969 -0.0028088719 2.8657466 0.001988738 3.7815000 12 1.187121 1.318914 0.0025347890 18.7965970 0.006752066 28.6806444 14 1.180412 1.311222 0.0003938832 -1.5804950 0.003159177 4.5259327 15 1.180110 1.310904 -0.0028174148 0.2662718 0.008730511 3.6103074 17 1.175657 1.306116 -0.0014473076 -1.0120336 0.006784037 2.6849265 18 1.175343 1.305767 0.0011978018 -0.4713968 0.006237487 2.1158244 19 1.175488 1.305945 0.0027170135 -1.0411062 0.007709206 1.8006119 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 408.007 co2l1 = 0.953 co2l0 = 0.016" [1] "co2l0 = -139.66 co2l1 = 0.215" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "34 out of 165 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "131 out of 1207 1-min values rejected as stack air" [1] "131 out of 1207 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"