[1] "2025-04-29 23:38:44 MDT" [1] "1504" "150413" "d103" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150413a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85560 63 [1] 85560 [1] 85560 [1] "testing skipping spike filter" [1] 85560 [1] 85560 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:38:48 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.846, ave o2scale2 = 0.76" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "16 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.846, ave o2scale2 = 0.76" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "16 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:38:48 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:38:48 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:38:58 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:38:59 MDT" [1] "reading in recalculated plot titles" [1] "Removed 16 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1409 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:39:02 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.954 co2off = 397.21 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.26 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.25 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 11 [5,] 12 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 224 233 0.1568093 0.1630692 0.1606350 2 -3.773219 122.7913 3 2 234 243 0.1637648 0.1701861 0.1676312 2 -32.751516 271.7475 5 2 501 510 0.3655185 0.3717781 0.3693439 3 -32.850680 267.2012 6 4 511 518 0.3724734 0.3773437 0.3756037 3 -3.863677 120.9825 7 3 519 528 0.3794306 0.3857028 0.3846574 3 -15.318898 210.4754 9 4 799 808 0.5742398 0.5804992 0.5780652 2 -3.892242 125.8006 10 2 809 818 0.5811946 0.5874548 0.5850204 2 -32.876961 266.2150 11 5 819 828 0.5881501 0.5944097 0.5933665 NA -14.727875 184.1339 13 2 1098 1107 0.7829343 0.7891942 0.7867595 3 -32.920719 268.0075 14 4 1108 1117 0.7898930 0.7961517 0.7937178 3 -3.933523 123.8952 15 3 1118 1127 0.7968472 0.8031066 0.8020637 3 -15.400133 214.5653 17 4 1398 1407 0.9916165 0.9978797 0.9954432 1 -3.984102 116.5411 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.190641 1.323616 0.0001426437 -0.3824691 0.0016492016 2.857679 3 1.190548 1.323513 -0.0036650398 1.5048100 0.0095382074 4.514055 5 1.184578 1.316674 -0.0009323020 -1.1809768 0.0027561695 4.729055 6 1.184382 1.316393 0.0028748399 -0.4026954 0.0057563032 1.053797 7 1.184508 1.316375 0.0028246917 -1.1406248 0.0074658402 2.210250 9 1.180321 1.312023 -0.0012236177 -0.3985147 0.0037222841 3.168725 10 1.180119 1.311805 -0.0010229654 0.3435318 0.0062531186 4.776610 11 1.180224 1.311921 -0.0004992096 -0.1142856 0.0003535534 2.563651 13 1.176974 1.308241 -0.0012303358 1.0385371 0.0039405459 3.006623 14 1.176677 1.307940 0.0034780165 0.3746895 0.0104776515 1.653250 15 1.176505 1.307732 0.0037767585 3.6007503 0.0121288395 4.971060 17 1.174031 1.305336 0.0008662797 4.4500747 0.0026564732 17.600940 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 407.945 co2l1 = 0.953 co2l0 = 0.026" [1] "co2l0 = -140.92 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "22 out of 30 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "8 out of 1242 1-min values rejected as stack air" [1] "8 out of 1242 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"