[1] "2025-04-29 23:38:09 MDT" [1] "1504" "150412" "d102" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150412a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:38:13 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.838, ave o2scale2 = 0.754" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "269 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.838, ave o2scale2 = 0.754" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "269 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:38:14 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:38:14 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:38:34 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:38:35 MDT" [1] "reading in recalculated plot titles" [1] "Removed 269 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1167 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:38:39 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.954 co2off = 402.92 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.48 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 116 121 0.1133450 0.1196047 0.1185618 3 -32.911453 271.2411 3 4 122 131 0.1203001 0.1265632 0.1241281 3 -3.911906 120.3701 4 3 132 137 0.1286493 0.1321308 0.1349144 3 -15.378547 207.5854 6 4 293 298 0.3241392 0.3283160 0.3269242 2 -3.861290 114.3159 7 2 299 306 0.3290116 0.3338802 0.3321415 2 -32.831615 266.2448 10 2 501 507 0.5328172 0.5369910 0.5355998 3 -32.672863 277.6830 11 4 508 514 0.5397728 0.5439456 0.5425546 3 -3.717525 125.8380 12 3 515 524 0.5446413 0.5509011 0.5498580 3 -15.182055 222.2515 14 4 794 803 0.7394097 0.7456725 0.7432384 2 -3.706609 127.0049 15 2 804 813 0.7463680 0.7526274 0.7501933 2 -32.672188 269.9133 17 2 1094 1103 0.9480764 0.9543359 0.9519019 3 -32.703023 269.1220 18 4 1104 1113 0.9550312 0.9612945 0.9588602 3 -3.722937 124.0017 19 5 1114 1123 0.9619914 0.9682569 0.9672108 NA -14.585219 186.2688 20 3 1124 1133 0.9689524 0.9752112 0.9741682 3 -15.209148 216.8140 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.186954 1.318924 0.0014791978 -2.2154872 0.0019766706 2.947497 3 1.186893 1.318838 0.0028292386 0.8257531 0.0084203861 3.941312 4 1.186905 1.318599 0.0041496898 -0.7694564 0.0058379539 4.361771 6 1.189017 1.321511 0.0008103728 -1.4651125 0.0014880276 2.934577 7 1.189498 1.322084 -0.0023413950 -0.5920274 0.0073310573 2.094226 10 1.199563 1.333410 0.0002620044 -9.5718366 0.0007634216 15.318847 11 1.199452 1.333416 0.0043934082 -4.6873530 0.0070379274 9.012282 12 1.199805 1.333865 0.0032115618 -6.2062272 0.0089074130 8.815441 14 1.198049 1.332227 0.0012571665 0.3290237 0.0046372605 2.403170 15 1.198033 1.332197 -0.0011901359 -0.3842932 0.0044592650 3.159675 17 1.195092 1.328862 -0.0005626124 0.3226591 0.0049642626 1.979750 18 1.194906 1.328629 0.0010633599 -0.7361889 0.0101644953 4.679343 19 1.194835 1.328529 -0.0070116654 0.7981397 0.0049939416 1.510570 20 1.194869 1.328445 0.0026812901 1.6501389 0.0078132455 2.650749 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 407.847 co2l1 = 0.953 co2l0 = 0.008" [1] "co2l0 = -139.97 co2l1 = 0.215" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "54 out of 130 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "76 out of 988 1-min values rejected as stack air" [1] "76 out of 988 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"