[1] "2025-04-29 23:37:43 MDT" [1] "1504" "150411" "d101" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150411a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85327 63 [1] 85327 [1] 85327 [1] "testing skipping spike filter" [1] 85327 [1] 85327 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:37:47 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.85, ave o2scale2 = 0.766" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "68 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.85, ave o2scale2 = 0.766" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "68 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:37:47 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:37:47 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:38:00 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:38:01 MDT" [1] "reading in recalculated plot titles" [1] "Removed 68 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 1 row(s) with variable TFCELL" [1] "TEMP: 1352 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:38:05 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.952 co2off = 413.2 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.82 minutes" [1] "Shortest Cal: 8.06 minutes" [1] "Longest Cal: 9.08 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 11 [5,] 12 14 [6,] 16 17 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 8 17 0.005849537 0.01210880 0.009674541 2 -4.031648 121.1626 3 2 18 27 0.012804138 0.01906337 0.016629120 2 -33.030797 269.4100 7 2 302 311 0.214588252 0.22084835 0.218413813 3 -33.076078 269.4575 8 4 312 321 0.221543721 0.22780671 0.225371698 3 -4.079633 125.9836 9 3 322 331 0.228502315 0.23476166 0.233718598 3 -15.554922 219.6467 12 4 602 611 0.423384201 0.42967847 0.427230512 2 -4.114188 121.4492 13 2 612 621 0.430378472 0.43667300 0.434225025 2 -33.119180 269.8938 14 5 622 631 0.437373380 0.44367370 0.442623409 NA -14.858062 180.9625 16 2 896 904 0.631890104 0.63748533 0.635386971 3 -33.088964 266.7801 17 4 905 913 0.639585648 0.64518287 0.643083900 3 -4.095786 121.9418 18 3 914 923 0.645882581 0.65217708 0.651128082 3 -15.574844 208.0209 20 3 965 973 0.696881019 0.70251105 0.701807051 3 -15.576268 234.5685 21 2 974 982 0.703212124 0.70951505 0.707114968 3 -33.107713 266.7804 22 4 983 992 0.710215162 0.71651108 0.714061994 3 -4.092953 125.6632 23 5 993 1002 0.717210706 0.72351045 0.722461516 NA -15.084125 189.8755 25 4 1247 1253 0.904789294 0.91039514 0.908996291 2 -3.997750 131.2153 26 2 1254 1262 0.911795023 0.91808912 0.915691220 2 -32.996151 272.3413 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.179540 1.309301 -8.878928e-04 -1.066096834 0.0039913323 3.709378 3 1.179460 1.309216 5.945185e-05 -2.207319272 0.0027774101 7.028275 7 1.177285 1.306710 -3.082716e-03 1.498702319 0.0084151987 4.664444 8 1.177040 1.306455 1.132893e-03 0.216005008 0.0040865958 2.337505 9 1.177023 1.306440 9.064531e-04 0.757880549 0.0051173451 1.783561 12 1.172219 1.301254 6.855213e-04 1.373042163 0.0019764235 5.837025 13 1.172458 1.301519 1.070193e-04 0.254229538 0.0051042084 2.534788 14 1.172530 1.301578 -1.861350e-03 0.008238132 0.0013258252 1.988182 16 1.174082 1.303290 -2.989572e-03 0.906175841 0.0070623946 2.622046 17 1.173706 1.302806 -1.439896e-04 -2.037071316 0.0007821721 4.897428 18 1.173901 1.303037 -1.476890e-04 -1.703018353 0.0028129960 2.876377 20 1.173893 1.302766 -1.507061e-03 13.583392655 0.0035494487 13.805848 21 1.174213 1.303061 -2.162403e-04 0.076780044 0.0021744330 1.705797 22 1.174492 1.303447 2.222945e-03 -0.243637667 0.0075559483 3.156221 23 1.174804 1.303835 4.966682e-04 -1.891336073 0.0003535534 2.885889 25 1.181365 1.310795 -1.177662e-04 -1.715886702 0.0019369959 4.098412 26 1.181385 1.310804 -2.588853e-03 -0.252169838 0.0081808607 4.133030 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 408.114 co2l1 = 0.952 co2l0 = 0.013" [1] "co2l0 = -141.1 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "121 out of 500 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "379 out of 1112 1-min values rejected as stack air" [1] "349 out of 978 Line 1 1-min values rejected as stack air" [1] "30 out of 134 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"