[1] "2025-04-29 23:37:07 MDT" [1] "1504" "150410" "d100" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150410a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:37:11 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.839, ave o2scale2 = 0.756" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "16 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.839, ave o2scale2 = 0.756" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "16 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:37:11 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:37:11 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:37:33 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:37:34 MDT" [1] "reading in recalculated plot titles" [1] "Removed 16 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1420 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:37:38 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.953 co2off = 407.88 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 245 254 0.1710905 0.1773644 0.1749272 2 -3.803453 124.3784 3 2 255 264 0.1780598 0.1843191 0.1818848 2 -32.796969 269.1154 4 5 265 274 0.1850151 0.1912744 0.1902312 NA -14.505938 182.5132 8 2 545 554 0.3797842 0.3860440 0.3836096 3 -32.837195 273.5198 9 4 555 564 0.3867395 0.3929989 0.3905648 3 -3.845414 122.8871 10 3 565 574 0.3936944 0.3999547 0.3989114 3 -15.318453 210.4309 15 4 845 854 0.5884650 0.5947280 0.5922918 2 -3.883195 120.8353 16 2 855 864 0.5954236 0.6016835 0.5992490 2 -32.882703 269.5747 18 2 1134 1143 0.7971606 0.8034236 0.8009864 3 -32.913859 271.7566 19 4 1144 1153 0.8041191 0.8103820 0.8079449 3 -3.924500 120.8839 20 5 1154 1163 0.8110775 0.8173368 0.8162934 NA -14.590969 188.3233 21 3 1164 1173 0.8180359 0.8242951 0.8232517 3 -15.404570 212.6948 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.194781 1.326225 0.0005629400 0.2315869 0.0020658117 4.586471 3 1.194808 1.326271 -0.0029552009 1.8268421 0.0085146932 6.307465 4 1.194684 1.326127 -0.0026206323 -3.4775165 0.0018561553 4.823565 8 1.193368 1.324646 0.0010690967 1.2639979 0.0039427314 4.645791 9 1.193210 1.324484 -0.0004952566 -0.4789202 0.0081080137 3.809447 10 1.193335 1.324581 0.0013400362 -5.0221523 0.0037676297 6.823940 15 1.191335 1.322325 0.0001460280 0.3530376 0.0010624672 3.191043 16 1.191232 1.322217 -0.0022492034 -3.1344001 0.0083764491 8.258085 18 1.189226 1.319970 -0.0024998014 -1.6387255 0.0064650287 6.597308 19 1.188926 1.319646 0.0024772374 0.5702755 0.0071009148 3.333955 20 1.188746 1.319451 -0.0013103706 -4.2283445 0.0009280777 6.199426 21 1.188503 1.319191 0.0006367584 1.9751430 0.0024821770 2.571312 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 407.921 co2l1 = 0.952 co2l0 = 0.012" [1] "co2l0 = -139.84 co2l1 = 0.215" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "123 out of 679 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "556 out of 1239 1-min values rejected as stack air" [1] "488 out of 1007 Line 1 1-min values rejected as stack air" [1] "68 out of 232 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"