[1] "2025-04-29 23:36:30 MDT" [1] "1504" "150409" "d099" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150409a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:36:35 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.834, ave o2scale2 = 0.752" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "2 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.834, ave o2scale2 = 0.752" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "2 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:36:35 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:36:35 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:36:56 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:36:58 MDT" [1] "reading in recalculated plot titles" [1] "Removed 2 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1434 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:37:02 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.954 co2off = 407.82 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 183 192 0.1274225 0.1336861 0.1312486 3 -32.690188 263.2113 3 4 193 202 0.1343813 0.1406403 0.1382063 3 -3.718617 120.1203 4 3 203 212 0.1413362 0.1475994 0.1465539 3 -15.187898 215.6642 6 4 483 492 0.3362310 0.3424907 0.3400563 2 -3.748539 123.5610 7 2 493 502 0.3431863 0.3494491 0.3470121 2 -32.742516 272.3909 9 2 783 792 0.5449387 0.5511979 0.5487636 3 -32.769578 272.2971 10 4 793 802 0.5518935 0.5581528 0.5557187 3 -3.777367 125.6883 11 5 803 812 0.5588484 0.5651083 0.5640652 NA -14.439406 182.0256 12 3 813 822 0.5658036 0.5720632 0.5710199 3 -15.227000 215.5440 15 4 1083 1092 0.7536366 0.7599004 0.7574626 2 -3.789758 124.5820 16 2 1093 1102 0.7605962 0.7668562 0.7644214 2 -32.776391 270.4831 18 2 1381 1390 0.9623710 0.9686494 0.9662080 3 -32.791570 270.0891 19 4 1391 1400 0.9693493 0.9756201 0.9731817 3 -3.804359 121.2055 20 3 1401 1410 0.9763170 0.9825766 0.9815332 3 -15.263016 211.9711 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.202454 1.334044 -0.0025330484 2.6178607 0.006896881 8.644735 3 1.202312 1.333915 0.0010482860 -1.7632389 0.003376891 6.981768 4 1.202308 1.333935 0.0020870136 2.1020308 0.005881260 2.765266 6 1.199551 1.330945 -0.0008119953 0.9864166 0.003260618 3.283305 7 1.199607 1.330988 -0.0016978180 -0.2555791 0.005914452 2.814033 9 1.197807 1.329407 -0.0022554499 -1.0953996 0.006945479 3.732809 10 1.197761 1.329360 0.0053353906 0.5624061 0.013241508 3.952238 11 1.197712 1.329305 -0.0024342543 -1.6238967 0.001723573 2.531067 12 1.197893 1.329506 0.0021455472 1.7410476 0.005908340 2.286956 15 1.196100 1.327565 -0.0005624925 -0.4979179 0.003586532 11.114556 16 1.196106 1.327586 0.0003551424 0.2833322 0.003322466 4.089797 18 1.195543 1.326989 -0.0003827832 0.2004280 0.002287007 3.389183 19 1.195556 1.327027 0.0021832442 -1.1442000 0.006186079 3.120936 20 1.195693 1.327165 0.0036630802 -0.5051707 0.009465619 2.411203 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 407.826 co2l1 = 0.952 co2l0 = 0.026" [1] "co2l0 = -140.45 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "43 out of 105 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "62 out of 1250 1-min values rejected as stack air" [1] "44 out of 346 Line 1 1-min values rejected as stack air" [1] "18 out of 904 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"