[1] "2025-04-29 23:36:11 MDT" [1] "1504" "150408" "d098" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150408a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 61500 63 [1] 61500 [1] 61500 [1] "testing skipping spike filter" [1] 61500 [1] 61500 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:36:14 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.827, ave o2scale2 = 0.746" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "50 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.827, ave o2scale2 = 0.746" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "48 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:36:14 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:36:14 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:36:23 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:36:24 MDT" [1] "reading in recalculated plot titles" [1] "Removed 48 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 975 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:36:26 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.953 co2off = 407.74 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.04 minutes" [1] "Average Cal: 9.05 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.1 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 2 3 [2,] 4 6 [3,] 7 8 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 5 1 10 0.3130788 0.3193393 0.3182964 NA -14.388063 185.6996 3 4 265 274 0.5008917 0.5071547 0.5047205 2 -3.583445 152.4927 4 2 275 284 0.5078499 0.5141098 0.5116753 2 -32.551898 266.7497 6 2 565 574 0.7096274 0.7158983 0.7134590 3 -32.600977 265.6962 7 4 575 584 0.7165956 0.7228707 0.7204277 3 -3.622055 120.2430 8 3 585 594 0.7235683 0.7298588 0.7288123 3 -15.094539 215.9429 10 4 860 869 0.9187172 0.9250306 0.9225751 2 -3.641852 124.2624 11 2 870 879 0.9257327 0.9320463 0.9295915 2 -32.626328 267.7022 12 5 880 889 0.9327489 0.9390650 0.9380132 NA -14.343719 180.2579 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.210567 1.345406 -0.0051190278 11.399585606 0.003623922 21.149814 3 1.210376 1.342485 0.0022741591 -4.497067811 0.006426823 15.891502 4 1.210378 1.342444 -0.0031548450 4.396578485 0.008404395 12.952783 6 1.208371 1.340455 0.0005092997 -0.075388151 0.002991233 4.964945 7 1.208161 1.340226 0.0017066285 0.001979325 0.008247797 2.612941 8 1.208140 1.340233 0.0033126199 -1.875968832 0.010748076 6.166127 10 1.205881 1.337703 -0.0024960285 -2.038016395 0.007833076 5.923692 11 1.205824 1.337658 0.0002578338 1.140485514 0.005718347 3.091646 12 1.205750 1.337525 -0.0050156869 -0.911549949 0.003579728 2.353983 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 407.687 co2l1 = 0.953 co2l0 = 0.009" [1] "co2l0 = -145.82 co2l1 = 0.239" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "49 out of 145 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "96 out of 830 1-min values rejected as stack air" [1] "96 out of 764 Line 1 1-min values rejected as stack air" [1] "0 out of 66 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"