[1] "2017-04-06 19:17:27 MDT"
[1] "1504"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1504/150408.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1504/150409.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1504/150410.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1504/150411.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1504/150412.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1504/150413.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1504/150414.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1504/150415.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1504/150416.html"  
[10] "/net/www/docs/homes/stephens/GO2/1504/150417.html"  
[11] "/net/www/docs/homes/stephens/GO2/1504/150418.html"  
[12] "/net/www/docs/homes/stephens/GO2/1504/150419.html"  
[13] "/net/www/docs/homes/stephens/GO2/1504/150420.html"  
[14] "/net/www/docs/homes/stephens/GO2/1504/150421.html"  
[15] "/net/www/docs/homes/stephens/GO2/1504/150422.html"  
[16] "/net/www/docs/homes/stephens/GO2/1504/150423.html"  
[17] "/net/www/docs/homes/stephens/GO2/1504/150424.html"  
[18] "/net/www/docs/homes/stephens/GO2/1504/150425.html"  
[19] "/net/www/docs/homes/stephens/GO2/1504/150426.html"  
[20] "/net/www/docs/homes/stephens/GO2/1504/150427.html"  
[21] "/net/www/docs/homes/stephens/GO2/1504/150428.html"  
[22] "/net/www/docs/homes/stephens/GO2/1504/150429.html"  
[23] "/net/www/docs/homes/stephens/GO2/1504/150430.html"  
[24] "/net/www/docs/homes/stephens/GO2/1504/150501.html"  
[25] "/net/www/docs/homes/stephens/GO2/1504/150502.html"  
[26] "/net/www/docs/homes/stephens/GO2/1504/150503.html"  
[27] "/net/www/docs/homes/stephens/GO2/1504/150504.html"  
[28] "/net/www/docs/homes/stephens/GO2/1504/150505.html"  
[29] "/net/www/docs/homes/stephens/GO2/1504/150506.html"  
[30] "/net/www/docs/homes/stephens/GO2/1504/150507.html"  
[31] "/net/www/docs/homes/stephens/GO2/1504/150508.html"  
[32] "/net/www/docs/homes/stephens/GO2/1504/150509.html"  
[33] "/net/www/docs/homes/stephens/GO2/1504/150510.html"  
[34] "/net/www/docs/homes/stephens/GO2/1504/150511.html"  
[35] "/net/www/docs/homes/stephens/GO2/1504/lmg_1504.html"
 [1] "/net/www/docs/homes/stephens/GO2/1504/150408.html"
 [2] "/net/www/docs/homes/stephens/GO2/1504/150409.html"
 [3] "/net/www/docs/homes/stephens/GO2/1504/150410.html"
 [4] "/net/www/docs/homes/stephens/GO2/1504/150411.html"
 [5] "/net/www/docs/homes/stephens/GO2/1504/150412.html"
 [6] "/net/www/docs/homes/stephens/GO2/1504/150413.html"
 [7] "/net/www/docs/homes/stephens/GO2/1504/150414.html"
 [8] "/net/www/docs/homes/stephens/GO2/1504/150415.html"
 [9] "/net/www/docs/homes/stephens/GO2/1504/150416.html"
[10] "/net/www/docs/homes/stephens/GO2/1504/150417.html"
[11] "/net/www/docs/homes/stephens/GO2/1504/150418.html"
[12] "/net/www/docs/homes/stephens/GO2/1504/150419.html"
[13] "/net/www/docs/homes/stephens/GO2/1504/150420.html"
[14] "/net/www/docs/homes/stephens/GO2/1504/150421.html"
[15] "/net/www/docs/homes/stephens/GO2/1504/150422.html"
[16] "/net/www/docs/homes/stephens/GO2/1504/150423.html"
[17] "/net/www/docs/homes/stephens/GO2/1504/150424.html"
[18] "/net/www/docs/homes/stephens/GO2/1504/150425.html"
[19] "/net/www/docs/homes/stephens/GO2/1504/150426.html"
[20] "/net/www/docs/homes/stephens/GO2/1504/150427.html"
[21] "/net/www/docs/homes/stephens/GO2/1504/150428.html"
[22] "/net/www/docs/homes/stephens/GO2/1504/150429.html"
[23] "/net/www/docs/homes/stephens/GO2/1504/150430.html"
[24] "/net/www/docs/homes/stephens/GO2/1504/150501.html"
[25] "/net/www/docs/homes/stephens/GO2/1504/150502.html"
[26] "/net/www/docs/homes/stephens/GO2/1504/150503.html"
[27] "/net/www/docs/homes/stephens/GO2/1504/150504.html"
[28] "/net/www/docs/homes/stephens/GO2/1504/150505.html"
[29] "/net/www/docs/homes/stephens/GO2/1504/150506.html"
[30] "/net/www/docs/homes/stephens/GO2/1504/150507.html"
[31] "/net/www/docs/homes/stephens/GO2/1504/150508.html"
[32] "/net/www/docs/homes/stephens/GO2/1504/150509.html"
[33] "/net/www/docs/homes/stephens/GO2/1504/150510.html"
[34] "/net/www/docs/homes/stephens/GO2/1504/150511.html"
[1] "150408" "150511"
 [1] "150408" "150409" "150410" "150411" "150412" "150413" "150414" "150415"
 [9] "150416" "150417" "150418" "150419" "150420" "150421" "150422" "150423"
[17] "150424" "150425" "150426" "150427" "150428" "150429" "150430" "150501"
[25] "150502" "150503" "150504" "150505" "150506" "150507" "150508" "150509"
[33] "150510" "150511"
[1] "000000" "999999"
[1] "150408_mr_proc.txt, 150408_cal_periods.txt, 150408_cal_param.txt,975jogs"
[1] "150409_mr_proc.txt, 150409_cal_periods.txt, 150409_cal_param.txt,1434jogs"
[1] "150410_mr_proc.txt, 150410_cal_periods.txt, 150410_cal_param.txt,1420jogs"
[1] "150411_mr_proc.txt, 150411_cal_periods.txt, 150411_cal_param.txt,1352jogs"
[1] "150412_mr_proc.txt, 150412_cal_periods.txt, 150412_cal_param.txt,1167jogs"
[1] "150413_mr_proc.txt, 150413_cal_periods.txt, 150413_cal_param.txt,1409jogs"
[1] "150414_mr_proc.txt, 150414_cal_periods.txt, 150414_cal_param.txt,1370jogs"
[1] "150415_mr_proc.txt, 150415_cal_periods.txt, 150415_cal_param.txt,1382jogs"
[1] "150416_mr_proc.txt, 150416_cal_periods.txt, 150416_cal_param.txt,1275jogs"
[1] "150417_mr_proc.txt, 150417_cal_periods.txt, 150417_cal_param.txt,1417jogs"
[1] "150418_mr_proc.txt, 150418_cal_periods.txt, 150418_cal_param.txt,1312jogs"
[1] "150419_mr_proc.txt, 150419_cal_periods.txt, 150419_cal_param.txt,1344jogs"
[1] "150420_mr_proc.txt, 150420_cal_periods.txt, 150420_cal_param.txt,1390jogs"
[1] "150421_mr_proc.txt, 150421_cal_periods.txt, 150421_cal_param.txt,1391jogs"
[1] "150422_mr_proc.txt, 150422_cal_periods.txt, 150422_cal_param.txt,1377jogs"
[1] "150423_mr_proc.txt, 150423_cal_periods.txt, 150423_cal_param.txt,1401jogs"
[1] "150424_mr_proc.txt, 150424_cal_periods.txt, 150424_cal_param.txt,1341jogs"
[1] "150425_mr_proc.txt, 150425_cal_periods.txt, 150425_cal_param.txt,1322jogs"
[1] "150426_mr_proc.txt, 150426_cal_periods.txt, 150426_cal_param.txt,1351jogs"
[1] "150427_mr_proc.txt, 150427_cal_periods.txt, 150427_cal_param.txt,1410jogs"
[1] "150428_mr_proc.txt, 150428_cal_periods.txt, 150428_cal_param.txt,1114jogs"
[1] "150429_mr_proc.txt, 150429_cal_periods.txt, 150429_cal_param.txt,1375jogs"
[1] "150430_mr_proc.txt, 150430_cal_periods.txt, 150430_cal_param.txt,1390jogs"
[1] "150501_mr_proc.txt, 150501_cal_periods.txt, 150501_cal_param.txt,1432jogs"
[1] "150502_mr_proc.txt, 150502_cal_periods.txt, 150502_cal_param.txt,1407jogs"
[1] "150503_mr_proc.txt, 150503_cal_periods.txt, 150503_cal_param.txt,1414jogs"
[1] "150504_mr_proc.txt, 150504_cal_periods.txt, 150504_cal_param.txt,1430jogs"
[1] "150505_mr_proc.txt, 150505_cal_periods.txt, 150505_cal_param.txt,1306jogs"
[1] "150506_mr_proc.txt, 150506_cal_periods.txt, 150506_cal_param.txt,1387jogs"
[1] "150507_mr_proc.txt, 150507_cal_periods.txt, 150507_cal_param.txt,1417jogs"
[1] "150508_mr_proc.txt, 150508_cal_periods.txt, 150508_cal_param.txt,1433jogs"
[1] "150509_mr_proc.txt, 150509_cal_periods.txt, 150509_cal_param.txt,1306jogs"
[1] "150510_mr_proc.txt, 150510_cal_periods.txt, 150510_cal_param.txt,1329jogs"
[1] "150511_mr_proc.txt, 150511_cal_periods.txt, 150511_cal_param.txt,112jogs"
[1] "150408" "150511" "d098"   "d131"  
[1] "Calculating derived concentration values"
[1] "2017-04-06 19:20:03 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.848, ave o2scale2 = 0.763"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-04-06 19:20:51 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-04-06 19:21:54 MDT"
[1] "2017-04-06 19:22:08 MDT"
[1] "Reading in cylinder log"
Read 68 records
[1] "Finding cylinder IDs"
Read 420 records
[1] "position 1 cylinder CC339495 description: HS CO2 = 376.46 O2 = -484.1"
[1] "position 2 cylinder CA07671 description: MS CO2 = 393.12 O2 = -532.4"
[1] "position 3 cylinder CC339490 description: LS CO2 = 404.05 O2 = -643.4"
[1] "position 4 cylinder CC332564 description: LT CO2 = 393.91 O2 = -579.3"
[1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.15 O2 = -1145.4"
[1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.32 O2 = -763"
[1] "Plotting jog shapes"
[1] "1504 Valve transient for  Line 1 after Line 2 = 1.12 , 0.89 , 0.38 , 0.02 , -0.05 n = 13"
[1] "1504 Valve transient for  Line 1 after Cal = -0.89 , -0.36 , -0.02 , -0.01 , 0 n = 130"
[1] "1504 Valve transient for  Line 2 after Line 1 = 0.89 , 0.57 , 0.12 , -0.08 , -0.11 n = 9"
[1] "1504 Valve transient for  Line 2 after Cal = -1.24 , -0.67 , -0.07 , 0 , 0.02 n = 5"
[1] "1504 Valve transient for  Line 1 after HS = -1.16 , -0.58 , -0.01 , 0 , -0.01 n = 44"
[1] "1504 Valve transient for  Line 1 after MS = -0.18 , -0.1 , -0.01 , -0.02 , -0.01 n = 62"
[1] "1504 Valve transient for  Line 1 after LS = 0.08 , 0.07 , 0.06 , 0.06 , 0.07 n = 1"
[1] "1504 Valve transient for  Line 1 after LT = -2.36 , -1.73 , -0.52 , 0.02 , 0.07 n = 23"
[1] "1504 Valve transient for  Line 2 after HS = -1.26 , -0.67 , -0.07 , -0.08 , -0.08 n = 1"
[1] "1504 Valve transient for  Line 2 after MS = -0.1 , -0.04 , 0.01 , 0.01 , 0.01 n = 2"
[1] "1504 Valve transient for  Line 2 after LT = -1.75 , -1.26 , -0.4 , 0 , 0.03 n = 2"
[1] "1504 Valve transient for  HS after Line 1 = 1.11 , 0.56 , 0.01 , 0 , 0 n = 56"
[1] "1504 Valve transient for  HS after Line 2 = 1.16 , 0.59 , 0.01 , 0.01 , 0 n = 4"
[1] "1504 Valve transient for  HS after MS = 2.26 , 1.04 , -0.17 , -0.15 , -0.13 n = 2"
[1] "1504 Valve transient for  HS after LS = 4.38 , 2.2 , 0.02 , 0.01 , 0.01 n = 63"
[1] "1504 Valve transient for  MS after Line 1 = 0.01 , 0.01 , 0 , 0 , 0 n = 2"
[1] "1504 Valve transient for  MS after LS = 1.69 , 0.83 , -0.02 , -0.01 , -0.01 n = 44"
[1] "1504 Valve transient for  MS after LT = 1.07 , 0.53 , -0.01 , -0.01 , 0 n = 17"
[1] "1504 Valve transient for  LS after Line 1 = -1.42 , -0.72 , 0 , 0 , 0 n = 61"
[1] "1504 Valve transient for  LS after Line 2 = -1.47 , -0.73 , 0 , 0 , 0 n = 6"
[1] "1504 Valve transient for  LS after HS = -4.4 , -2.21 , -0.02 , 0 , 0 n = 63"
[1] "1504 Valve transient for  LT after HS = -0.88 , -0.42 , 0.04 , 0.03 , 0.02 n = 21"
[1] "1504 Valve transient for  LT after LS = 0.65 , 0.35 , 0.05 , 0.04 , 0.03 n = 21"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "677 out of 7490 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "6813 out of 38497 1-min values rejected as stack air"
[1] "6170 out of 35234 Line 1 1-min values rejected as stack air"
[1] "643 out of 3263 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1504loxy.d098"
[1] "LMG1504loxy.d099"
[1] "LMG1504loxy.d100"
[1] "LMG1504loxy.d101"
[1] "LMG1504loxy.d102"
[1] "LMG1504loxy.d104"
[1] "LMG1504loxy.d105"
[1] "LMG1504loxy.d106"
[1] "LMG1504loxy.d107"
[1] "LMG1504loxy.d108"
[1] "LMG1504loxy.d109"
[1] "LMG1504loxy.d110"
[1] "LMG1504loxy.d111"
[1] "LMG1504loxy.d112"
[1] "LMG1504loxy.d113"
[1] "LMG1504loxy.d114"
[1] "LMG1504loxy.d115"
[1] "LMG1504loxy.d116"
[1] "LMG1504loxy.d120"
[1] "LMG1504loxy.d121"
[1] "LMG1504loxy.d122"
[1] "LMG1504loxy.d123"
[1] "LMG1504loxy.d124"
[1] "LMG1504loxy.d127"
[1] "LMG1504loxy.d128"
[1] "LMG1504loxy.d129"
[1] "LMG1504loxy.d130"
[1] "LMG1504loxy.d131"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]       [,2]
 [1,]  92.5 0.08688097
 [2,]  97.5 0.00000000
 [3,] 102.5 0.17376195
 [4,] 112.5 0.34752389
 [5,] 117.5 0.26064292
 [6,] 122.5 0.52128584
 [7,] 127.5 0.95569070
 [8,] 132.5 0.95569070
 [9,] 137.5 0.34752389
[10,] 142.5 0.43440487
[11,] 147.5 0.34752389
[12,] 152.5 0.17376195
[13,] 157.5 0.08688097
[14,] 162.5 0.17376195
[15,] 167.5 0.34752389
[16,] 172.5 0.08688097
[17,] 182.5 0.43440487
[18,] 192.5 0.52128584
[19,] 197.5 0.52128584
[20,] 202.5 0.60816681
[21,] 207.5 0.26064292
[22,] 212.5 0.26064292
[23,] 217.5 0.34752389
[24,] 222.5 0.26064292
[25,] 227.5 0.60816681
[26,] 232.5 0.43440487
[27,] 237.5 0.08688097
[28,] 242.5 0.60816681
[29,] 247.5 0.43440487
[30,] 252.5 0.43440487
[31,] 262.5 0.43440487
[32,] 267.5 0.43440487
[33,] 272.5 0.17376195
[34,] 277.5 0.34752389
[35,] 282.5 0.60816681
[36,] 287.5 1.21633362
[37,] 292.5 1.04257168
[38,] 297.5 1.04257168
[39,] 302.5 1.04257168
[40,] 307.5 1.04257168
[41,] 312.5 1.04257168
[42,] 317.5 1.39009557
[43,] 322.5 2.17202433
[44,] 327.5 2.60642919
[45,] 332.5 2.78019114
[46,] 337.5 1.21633362
[47,] 342.5 0.78192876
[48,] 347.5 1.04257168
[49,] 352.5 0.52128584
[50,] 357.5 0.26064292
[51,] 362.5 0.52128584
[52,] 367.5 0.17376195
[53,] 372.5 0.34752389
[54,] 377.5 0.95569070
[55,] 382.5 0.26064292
[56,] 387.5 0.34752389
[57,] 392.5 0.60816681
[58,] 397.5 0.17376195
[59,] 402.5 0.08688097
[60,] 407.5 0.08688097
[61,] 422.5 0.08688097
[62,] 427.5 0.08688097
[63,] 432.5 0.08688097
[64,] 437.5 0.26064292
[65,] 442.5 0.17376195
       [,1]       [,2]
 [1,]  92.5 0.17376195
 [2,]  97.5 0.43440487
 [3,] 102.5 0.17376195
 [4,] 107.5 0.34752389
 [5,] 112.5 0.17376195
 [6,] 117.5 0.52128584
 [7,] 122.5 0.43440487
 [8,] 127.5 0.95569070
 [9,] 132.5 0.69504778
[10,] 137.5 0.52128584
[11,] 142.5 0.17376195
[12,] 147.5 0.00000000
[13,] 157.5 0.08688097
[14,] 167.5 0.08688097
[15,] 172.5 0.08688097
[16,] 177.5 0.08688097
[17,] 187.5 0.17376195
[18,] 197.5 0.17376195
[19,] 202.5 0.43440487
[20,] 207.5 0.26064292
[21,] 212.5 0.52128584
[22,] 217.5 1.73761946
[23,] 222.5 1.30321460
[24,] 227.5 3.04083406
[25,] 232.5 0.43440487
[26,] 237.5 0.34752389
[27,] 242.5 0.34752389
[28,] 247.5 0.26064292
[29,] 257.5 0.08688097
[30,] 262.5 0.08688097
[31,] 267.5 0.34752389
[32,] 272.5 0.26064292
[33,] 277.5 0.26064292
[34,] 282.5 0.60816681
[35,] 287.5 0.34752389
[36,] 292.5 0.52128584
[37,] 297.5 0.52128584
[38,] 302.5 0.60816681
[39,] 307.5 0.34752389
[40,] 312.5 0.43440487
[41,] 317.5 0.43440487
[42,] 322.5 0.86880973
[43,] 327.5 2.25890530
[44,] 332.5 1.73761946
[45,] 337.5 0.78192876
[46,] 342.5 0.60816681
[47,] 347.5 0.43440487
[48,] 352.5 0.26064292
[49,] 357.5 0.26064292
[50,] 362.5 0.08688097
[51,] 367.5 0.60816681
[52,] 372.5 0.26064292
[53,] 377.5 0.08688097
[54,] 382.5 0.52128584
[55,] 387.5 0.34752389
[56,] 392.5 0.17376195
[57,] 397.5 0.17376195
[58,] 407.5 0.08688097
[59,] 412.5 0.08688097
[60,] 437.5 0.17376195
       [,1]       [,2]
 [1,] 102.5 0.08688097
 [2,] 117.5 0.08688097
 [3,] 122.5 0.17376195
 [4,] 197.5 0.08688097
 [5,] 202.5 0.17376195
 [6,] 207.5 0.17376195
 [7,] 212.5 0.34752389
 [8,] 217.5 0.43440487
 [9,] 222.5 0.43440487
[10,] 227.5 0.95569070
[11,] 232.5 1.21633362
[12,] 237.5 0.95569070
[13,] 242.5 1.04257168
[14,] 247.5 0.52128584
[15,] 252.5 0.08688097
[16,] 257.5 0.17376195
[17,] 262.5 0.08688097
[18,] 267.5 0.34752389
[19,] 272.5 0.34752389
[20,] 277.5 0.34752389
[21,] 282.5 0.34752389
[22,] 292.5 0.34752389
[23,] 297.5 0.34752389
[24,] 302.5 0.43440487
[25,] 307.5 0.43440487
[26,] 312.5 0.95569070
[27,] 317.5 0.78192876
[28,] 327.5 0.17376195
[29,] 332.5 0.26064292
[30,] 337.5 1.47697654
[31,] 342.5 1.56385752
[32,] 347.5 0.95569070
[33,] 352.5 0.43440487
[34,] 357.5 0.52128584
[35,] 362.5 0.34752389
[36,] 367.5 0.17376195
[37,] 372.5 0.43440487
[38,] 377.5 0.43440487
[39,] 382.5 0.34752389
[40,] 387.5 0.17376195
[41,] 392.5 0.08688097
[42,] 397.5 0.08688097
[43,] 402.5 0.08688097
       [,1]       [,2]
 [1,] 167.5 0.00000000
 [2,] 197.5 0.08688097
 [3,] 207.5 0.08688097
 [4,] 212.5 0.08688097
 [5,] 217.5 0.17376195
 [6,] 222.5 0.52128584
 [7,] 227.5 0.17376195
 [8,] 232.5 0.26064292
 [9,] 237.5 0.17376195
[10,] 337.5 0.43440487
[11,] 342.5 3.12771503
[12,] 347.5 1.39009557
[13,] 352.5 0.86880973
[14,] 357.5 0.26064292
[15,] 362.5 0.43440487
[16,] 367.5 1.12945265
[17,] 372.5 1.91138141
[18,] 377.5 1.47697654
[19,] 382.5 0.95569070
[20,] 387.5 0.95569070
[21,] 392.5 0.52128584
[22,] 397.5 0.17376195
[23,] 402.5 0.26064292
[1] "making cruise html"
[1] "2017-04-06 19:23:29 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"