[1] "2025-04-29 23:34:02 MDT" [1] "1503" "150402" "d092" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150402a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:34:06 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.867, ave o2scale2 = 0.782" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "69 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.867, ave o2scale2 = 0.782" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "67 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:34:06 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:34:06 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:34:28 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:34:29 MDT" [1] "reading in recalculated plot titles" [1] "Removed 67 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1369 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:34:35 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.951 co2off = 413.75 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.73 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 104 113 0.07300741 0.07927052 0.07683536 3 -32.873773 269.1050 3 4 114 123 0.07996591 0.08622558 0.08379111 3 -3.840680 120.0627 4 3 124 133 0.08692095 0.09318056 0.09213717 3 -15.326547 210.5993 6 4 404 413 0.28173032 0.28799042 0.28555605 2 -3.845055 118.0230 7 2 414 423 0.28868605 0.29494560 0.29251127 2 -32.884828 269.5796 9 2 697 706 0.49043035 0.49668981 0.49425550 3 -32.986703 267.6379 10 4 707 714 0.49738536 0.50364468 0.50167398 3 -3.945906 121.4543 11 5 715 724 0.50434031 0.51059954 0.50955618 NA -14.915781 185.6009 12 3 725 734 0.51129508 0.51755787 0.51651451 3 -15.439617 216.1247 14 4 970 976 0.70050946 0.70537801 0.70370882 2 -3.935789 123.0502 15 2 977 984 0.70607318 0.71094213 0.70920317 2 -32.969146 264.5942 17 2 1239 1248 0.90780159 0.91406076 0.91162668 3 -32.924102 266.1212 18 4 1249 1258 0.91476047 0.92102358 0.91858622 3 -3.912844 120.7186 19 3 1259 1268 0.92171889 0.92798177 0.92693773 3 -15.414492 211.9960 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.155931 1.282098 0.0005567332 -1.39658196 0.004165110 4.354820 3 1.155800 1.281938 -0.0001938497 -1.08567805 0.003842380 3.928713 4 1.155923 1.282109 0.0045817583 0.14612934 0.012502801 3.259428 6 1.154447 1.280452 -0.0004227451 0.27544448 0.003315520 4.589736 7 1.154454 1.280470 -0.0018543046 -0.03294282 0.006445925 2.264041 9 1.149596 1.275129 -0.0003833185 -2.18477809 0.002287327 6.970360 10 1.149614 1.275135 0.0022799499 1.09209085 0.005942794 2.923542 11 1.149877 1.275438 -0.0034319231 -1.66530548 0.002430680 2.189245 12 1.149952 1.275523 0.0024302090 -0.43449218 0.007339612 1.285406 14 1.152225 1.278036 -0.0031715664 -0.47738623 0.006716517 2.183161 15 1.152559 1.278382 -0.0019860212 0.01642343 0.004517097 2.034201 17 1.155108 1.281357 -0.0028269179 0.27322669 0.007190018 3.721764 18 1.154977 1.281221 0.0026820370 0.64615581 0.006859479 2.036959 19 1.155147 1.281451 0.0033469997 1.22412658 0.008255304 1.940671 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 407.946 co2l1 = 0.951 co2l0 = 0.009" [1] "co2l0 = -139.96 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "8 out of 10 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "2 out of 1194 1-min values rejected as stack air" [1] "2 out of 1194 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"