[1] "2025-04-29 23:33:22 MDT" [1] "1503" "150401" "d091" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150401a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:33:26 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.866, ave o2scale2 = 0.781" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "14 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.866, ave o2scale2 = 0.781" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "14 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:33:27 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:33:27 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:33:49 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:33:50 MDT" [1] "reading in recalculated plot titles" [1] "Removed 14 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1422 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:33:57 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.952 co2off = 407.84 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.44 minutes" [1] "Shortest Cal: 3 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 42 45 0.02944748 0.03431597 0.03396820 2 -3.691000 129.2666 3 2 46 49 0.03640231 0.03848860 0.03814084 2 -32.722438 259.0609 5 2 329 338 0.23815052 0.24441068 0.24197604 3 -32.810445 267.0226 6 4 339 348 0.24510611 0.25136551 0.24893114 3 -3.774516 119.4046 7 5 349 358 0.25206120 0.25832040 0.25727714 NA -14.626688 172.2717 8 3 359 368 0.25901577 0.26527541 0.26423205 3 -15.263805 216.1328 10 4 629 638 0.44689100 0.45315561 0.45071701 2 -3.789586 123.3017 11 2 639 648 0.45385185 0.46011143 0.45767708 2 -32.832680 269.4150 13 2 929 938 0.65558507 0.66184410 0.65941010 3 -32.866289 268.9359 14 4 939 948 0.66253955 0.66880286 0.66636857 3 -3.819055 124.5979 15 3 949 958 0.66949823 0.67576157 0.67471819 3 -15.319617 210.4957 17 4 1228 1237 0.86429051 0.87054977 0.86811591 2 -3.849633 128.3118 18 2 1238 1247 0.87124537 0.87750819 0.87507430 2 -32.877680 264.7388 19 5 1248 1257 0.87820370 0.88446308 0.88341995 NA -14.753719 189.8662 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.157221 1.283658 -0.0009984192 7.269083e-15 0.0007071068 0.000000 3 1.157642 1.284128 -0.0116071057 -3.021928e+00 0.0082201163 2.140120 5 1.155082 1.280950 -0.0008742729 1.029378e+00 0.0043148205 2.651481 6 1.154977 1.280846 0.0005793879 6.698541e-01 0.0049989675 3.422324 7 1.155013 1.280900 0.0016226337 3.219387e+00 0.0011490485 4.531130 8 1.155109 1.280991 0.0050526849 2.536994e+00 0.0126844621 4.409629 10 1.155331 1.281363 -0.0019122079 7.858002e-02 0.0059281352 4.097766 11 1.155438 1.281489 -0.0055961401 -4.259758e-02 0.0147794967 2.518340 13 1.154945 1.280916 -0.0008520906 8.197439e-01 0.0029010731 4.882541 14 1.154956 1.280918 0.0016960400 1.186133e+00 0.0062521815 4.133835 15 1.155142 1.281140 0.0014743561 5.092175e-01 0.0059275233 2.231091 17 1.154660 1.280593 0.0020781997 2.506574e+00 0.0052535530 7.650038 18 1.154768 1.280733 -0.0020841316 1.427504e+00 0.0067574725 3.907179 19 1.154678 1.280612 0.0006864417 -5.048732e+00 0.0004861359 7.067418 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 407.84 co2l1 = 0.951 co2l0 = 0.012" [1] "co2l0 = -142.1 co2l1 = 0.227" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "42 out of 67 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "25 out of 1242 1-min values rejected as stack air" [1] "25 out of 1242 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"