[1] "2025-04-29 23:32:47 MDT" [1] "1503" "150331" "d090" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150331a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:32:51 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.862, ave o2scale2 = 0.777" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "88 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.862, ave o2scale2 = 0.777" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "88 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:32:51 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:32:51 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:33:13 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:33:14 MDT" [1] "reading in recalculated plot titles" [1] "Removed 88 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1348 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:33:18 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.953 co2off = 396.76 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.32 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 2 2 [2,] 3 4 [3,] 5 7 [4,] 8 9 [5,] 10 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 5 1 8 0.001214120 0.006082292 0.005734447 NA -14.046937 182.0010 2 3 9 18 0.006777836 0.013037240 0.011994227 1 -14.992547 208.9930 4 4 279 288 0.194671499 0.200935012 0.198500206 2 -3.501617 118.3960 5 2 289 298 0.201630411 0.207890162 0.205455787 2 -32.538102 272.3302 7 2 578 587 0.403369329 0.409629196 0.407194748 3 -32.622320 266.9745 8 4 588 595 0.410324595 0.415193171 0.413454292 3 -3.597115 117.4032 9 3 596 604 0.417279340 0.423539352 0.422843750 3 -15.071923 200.0255 12 4 834 843 0.612046325 0.618306279 0.615872009 2 -3.645289 116.1081 13 2 844 849 0.621783565 0.625260793 0.624217679 2 -32.670984 266.4975 16 2 1097 1103 0.820746528 0.827005758 0.825197465 3 -32.701257 265.4157 17 4 1104 1113 0.827703704 0.833964641 0.831530490 3 -3.662602 122.1663 18 3 1114 1123 0.834662905 0.840922598 0.839879586 3 -15.142094 198.9696 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.165302 1.292393 0.3286047092 -5.8102290 0.2327265194 4.115813 2 1.165346 1.292456 0.0032631648 -5.1202093 0.0080580864 8.296847 4 1.164015 1.290957 -0.0004089353 -0.6812801 0.0015416239 2.305892 5 1.164001 1.290933 -0.0007896988 2.1193436 0.0038363478 9.603833 7 1.159346 1.285984 -0.0004895789 0.8350425 0.0013192587 3.499238 8 1.159321 1.285986 0.0004867331 -1.2088335 0.0046751365 7.959299 9 1.159853 1.286639 0.0024170550 -8.4830952 0.0067382056 8.499264 12 1.158239 1.284826 -0.0001314856 0.2230891 0.0017435908 3.601097 13 1.158036 1.284614 -0.0006678173 1.0320243 0.0008990374 1.478000 16 1.158101 1.284617 -0.0011105844 1.3185006 0.0030741994 4.097003 17 1.157999 1.284555 0.0039662897 -2.5144133 0.0103319318 6.950643 18 1.158077 1.284680 0.0028902341 10.0947801 0.0073648538 13.216884 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 407.642 co2l1 = 0.951 co2l0 = 0.026" [1] "co2l0 = -138.29 co2l1 = 0.213" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "68 out of 210 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "142 out of 1176 1-min values rejected as stack air" [1] "100 out of 1104 Line 1 1-min values rejected as stack air" [1] "42 out of 72 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"