[1] "2025-04-29 23:32:12 MDT" [1] "1503" "150330" "d089" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150330a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:32:16 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.856, ave o2scale2 = 0.772" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "41 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.856, ave o2scale2 = 0.772" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "40 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:32:16 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:32:16 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:32:37 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:32:38 MDT" [1] "reading in recalculated plot titles" [1] "Removed 40 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1396 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:32:42 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.954 co2off = 412.76 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.06 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 2 217 226 0.1510490 0.1573080 0.1548740 3 -32.304023 263.6334 4 4 227 236 0.1580036 0.1642628 0.1618288 3 -3.279836 122.0708 5 3 237 246 0.1649584 0.1712523 0.1702014 3 -14.749633 220.0924 7 4 512 520 0.3597894 0.3660486 0.3639621 2 -3.355624 119.3659 8 2 521 530 0.3667442 0.3730035 0.3705694 2 -32.367344 271.7853 9 5 531 540 0.3737037 0.3799689 0.3789257 NA -14.070812 182.0167 12 2 788 797 0.5685476 0.5748078 0.5723734 3 -32.445672 269.0195 13 4 798 807 0.5755032 0.5817628 0.5793288 3 -3.418187 115.4754 14 3 808 816 0.5824583 0.5887177 0.5880230 3 -14.912364 191.2772 16 4 1077 1086 0.7772211 0.7834838 0.7810479 2 -3.525094 119.2654 17 2 1087 1096 0.7841794 0.7904387 0.7880046 2 -32.550453 269.4741 19 2 1377 1386 0.9859097 0.9921691 0.9897349 2 -32.524523 266.5436 20 4 1387 1396 0.9928647 0.9991243 0.9966901 2 -3.509719 125.2379 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.175735 1.303516 -0.0007244566 -0.79593312 0.002316704 4.537827 4 1.175413 1.303180 0.0007274879 1.13979313 0.005395097 4.169957 5 1.175372 1.303101 0.0034362189 5.61656829 0.009314294 7.507237 7 1.169959 1.297311 -0.0001967626 -2.93654336 0.002495779 9.069222 8 1.170102 1.297423 -0.0016954611 -1.19264947 0.006948069 7.988885 9 1.169869 1.297113 0.0056165751 1.04589368 0.003977476 1.434510 12 1.164154 1.291283 0.0009643040 -0.30144310 0.002651598 12.131584 13 1.164064 1.291181 0.0006615075 -0.98781077 0.006013007 9.589587 14 1.163845 1.291106 0.0016270339 8.16840669 0.005080294 8.179487 16 1.162446 1.289524 -0.0001844276 -0.11580630 0.003556464 2.230912 17 1.162582 1.289702 -0.0025334397 1.12201509 0.006995195 3.331524 19 1.165381 1.292476 -0.0011034111 0.20362604 0.003798927 1.201400 20 1.165291 1.292375 0.0022585777 -0.06035515 0.006950077 8.967836 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 407.491 co2l1 = 0.951 co2l0 = 0.015" [1] "co2l0 = -139.43 co2l1 = 0.215" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "114 out of 415 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "301 out of 1217 1-min values rejected as stack air" [1] "273 out of 985 Line 1 1-min values rejected as stack air" [1] "28 out of 232 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"