[1] "2025-04-29 23:31:37 MDT" [1] "1503" "150329" "d088" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150329a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:31:41 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.842, ave o2scale2 = 0.76" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "9 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.842, ave o2scale2 = 0.76" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "11 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:31:41 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:31:41 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:32:02 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:32:04 MDT" [1] "reading in recalculated plot titles" [1] "Removed 11 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1425 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:32:07 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.953 co2off = 412.25 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.73 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 152 161 0.1075869 0.1138461 0.1114122 2 -2.957719 121.5253 3 2 162 171 0.1145417 0.1208012 0.1183671 2 -31.957367 267.3369 4 5 172 181 0.1214968 0.1277565 0.1267132 NA -13.677375 179.9921 6 2 450 459 0.3162999 0.3225661 0.3201283 3 -32.022500 267.1484 7 4 460 469 0.3232615 0.3295208 0.3270864 3 -3.023797 119.5856 8 3 470 479 0.3302162 0.3364755 0.3354322 3 -14.487273 220.4242 10 4 750 759 0.5249943 0.5312541 0.5288197 2 -3.085648 122.6657 11 2 760 769 0.5319495 0.5382087 0.5357746 2 -32.082688 267.6466 13 2 1050 1059 0.7336709 0.7399304 0.7374960 3 -32.148141 268.8067 14 4 1060 1066 0.7406258 0.7448021 0.7434083 3 -3.144250 121.3576 16 3 1076 1085 0.7545428 0.7608016 0.7597585 3 -14.632562 213.2347 18 4 1343 1352 0.9423540 0.9486138 0.9461796 2 -3.206523 121.8677 19 2 1353 1362 0.9493091 0.9555689 0.9531346 2 -32.214242 267.0979 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.191413 1.321316 -0.0007830466 1.0122778 0.0028693656 3.537256 3 1.191410 1.321316 -0.0021492586 0.8917717 0.0059880310 2.309070 4 1.191455 1.321386 0.0004993134 2.0082310 0.0003535534 4.042019 6 1.190268 1.320036 -0.0010435097 -0.4166429 0.0052837985 2.674630 7 1.190088 1.319849 0.0020770639 -0.4148336 0.0063174706 2.386528 8 1.190139 1.319882 0.0041150851 6.0182581 0.0105381396 7.933151 10 1.186853 1.315998 0.0024701388 0.1624069 0.0065214222 1.656520 11 1.186975 1.316180 -0.0015574180 0.8576623 0.0084719864 2.549913 13 1.184611 1.313481 -0.0011127568 0.1658858 0.0037260770 3.160540 14 1.184536 1.313335 0.0046419536 -0.8148867 0.0084879280 1.516995 16 1.184166 1.312939 0.0018572958 0.4688112 0.0071124576 1.654152 18 1.181202 1.309655 -0.0024860988 1.5500151 0.0075589157 4.291448 19 1.181165 1.309616 -0.0002829959 0.9480670 0.0045497544 3.349542 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 407.176 co2l1 = 0.952 co2l0 = 0.015" [1] "co2l0 = -140.21 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "50 out of 150 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "100 out of 1237 1-min values rejected as stack air" [1] "100 out of 1237 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"