[1] "2025-04-29 23:31:12 MDT" [1] "1503" "150328" "d087" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150328a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85475 63 [1] 85475 [1] 85475 [1] "testing skipping spike filter" [1] 85475 [1] 85475 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:31:15 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.839, ave o2scale2 = 0.757" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "21 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.839, ave o2scale2 = 0.757" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "23 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:31:16 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:31:16 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:31:28 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:31:29 MDT" [1] "reading in recalculated plot titles" [1] "Removed 23 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 6 row(s) with variable TFCELL" [1] "TEMP: 1394 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:31:32 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.954 co2off = 402.23 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.49 minutes" [1] "Shortest Cal: 0 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 10 [5,] 12 13 [6,] 14 16 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 28 37 0.02110402 0.02736345 0.02492955 2 -2.881938 122.4753 3 2 38 47 0.02805909 0.03431889 0.03188477 2 -31.882172 267.8204 5 2 328 337 0.22983105 0.23609404 0.23366005 3 -31.872062 271.2358 6 4 338 347 0.23678950 0.24305263 0.24061764 3 -2.878344 122.7281 7 3 348 357 0.24374795 0.25001253 0.24896927 3 -14.360320 211.9195 9 4 626 635 0.43872271 0.44498238 0.44254815 2 -2.866937 124.6636 10 2 636 645 0.44567781 0.45194204 0.44950584 2 -31.889367 266.6858 11 5 646 655 0.45263785 0.45890069 0.45785477 NA -13.566812 185.1777 14 2 664 671 0.48837891 0.49463837 0.49289978 2 -31.857573 264.8012 15 4 672 681 0.49533383 0.50159303 0.49915894 2 -2.886953 115.5323 16 5 682 691 0.50228854 0.50854809 0.50750496 NA -14.034281 184.2367 18 4 952 961 0.69011542 0.69638634 0.69394681 2 -2.880828 120.1836 19 2 962 971 0.69708345 0.70334604 0.70091169 2 -31.867273 269.3399 21 2 1249 1258 0.89887865 0.90514149 0.90270667 3 -31.870703 267.0990 22 4 1259 1268 0.90583692 0.91209606 0.90966211 3 -2.882680 121.8088 23 3 1269 1278 0.91279167 0.91905116 0.91800782 3 -14.356492 215.4342 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.188326 1.317020 0.0002690998 -0.1956877 0.004814877 2.044829 3 1.188359 1.317058 -0.0001990831 -1.3884523 0.003856197 4.650358 5 1.189865 1.318851 -0.0009333036 0.8093426 0.005756014 2.595905 6 1.189802 1.318774 0.0008681931 0.9231175 0.005609403 3.976432 7 1.189855 1.318812 0.0024203134 2.2702127 0.007103856 3.012184 9 1.191715 1.321135 -0.0008335032 -0.1672691 0.003181104 1.887124 10 1.191899 1.321340 -0.0056347868 -0.1488982 0.015113094 2.700584 11 1.191697 1.321141 -0.0023585882 3.7791608 0.001679379 4.989911 14 1.191076 1.321306 -0.0056468638 3.2962039 0.010937780 8.475530 15 1.191387 1.321574 0.0004755218 1.4978966 0.004202299 8.349140 16 1.191670 1.321756 0.0055546309 -5.6885848 0.003933281 7.406509 18 1.193401 1.323900 0.0001419311 0.5796196 0.003752789 1.892443 19 1.193586 1.324106 -0.0006236253 0.2779424 0.003218934 2.244261 21 1.193777 1.324333 -0.0015520723 -0.3334127 0.004863740 1.689049 22 1.193615 1.324150 0.0012862591 -0.4645724 0.006847790 3.381723 23 1.193644 1.324177 0.0014626576 3.1694092 0.004918582 4.644386 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 406.983 co2l1 = 0.952 co2l0 = 0.006" [1] "co2l0 = -140.1 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "20 out of 25 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "5 out of 1176 1-min values rejected as stack air" [1] "5 out of 1176 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"