[1] "2025-04-29 23:30:37 MDT" [1] "1503" "150327" "d086" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150327a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:30:41 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.843, ave o2scale2 = 0.761" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "8 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.843, ave o2scale2 = 0.761" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "8 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:30:41 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:30:41 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:31:02 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:31:04 MDT" [1] "reading in recalculated plot titles" [1] "Removed 8 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1428 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:31:07 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.952 co2off = 406.9 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 259 268 0.1863299 0.1925894 0.1901553 2 -2.730930 123.2976 3 2 269 278 0.1932852 0.1995448 0.1971105 2 -31.731352 264.4153 4 5 279 288 0.2002405 0.2065035 0.2054601 NA -13.384156 182.7962 6 2 559 568 0.3950168 0.4012755 0.3988412 3 -31.835398 267.8823 7 4 569 578 0.4019711 0.4082303 0.4057961 3 -2.821781 123.0566 8 3 579 588 0.4089259 0.4151888 0.4141457 3 -14.307102 211.1681 10 4 859 868 0.6037483 0.6100116 0.6075756 2 -2.889922 124.9677 11 2 869 878 0.6107072 0.6169668 0.6145322 2 -31.895055 267.5514 13 2 1159 1168 0.8124306 0.8186896 0.8162554 3 -31.911930 270.3394 14 4 1169 1178 0.8193850 0.8256482 0.8232116 3 -2.906641 123.3139 15 5 1179 1188 0.8263438 0.8326030 0.8315599 NA -13.587187 182.0315 16 3 1189 1198 0.8332986 0.8395613 0.8385171 3 -14.382086 213.3939 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.187707 1.316097 0.0010379680 -0.162210949 0.0039881853 2.3135754 3 1.187719 1.316100 -0.0010020889 -1.014652893 0.0046602107 5.2928777 4 1.187340 1.315674 0.0008111143 -0.362165582 0.0005745243 2.3849019 6 1.183712 1.311750 -0.0015162739 0.873861203 0.0042545849 3.1469279 7 1.183660 1.311694 0.0009583426 0.286399386 0.0038844930 1.3941537 8 1.183846 1.311912 0.0025356041 -0.054845595 0.0078933981 0.5460190 10 1.184671 1.312846 -0.0008388761 -0.111914671 0.0024766206 3.0473181 11 1.184597 1.312788 -0.0022264124 -0.007018078 0.0069425607 0.9960511 13 1.186116 1.314478 0.0004406770 0.984040251 0.0030579298 4.4058716 14 1.185962 1.314312 -0.0012520746 0.837216988 0.0058919541 4.4491474 15 1.186071 1.314468 0.0013728264 -4.089172530 0.0009722718 6.1078327 16 1.186145 1.314579 0.0037177892 4.847483970 0.0098103636 6.4753990 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 406.941 co2l1 = 0.952 co2l0 = 0.011" [1] "co2l0 = -141.09 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "10 out of 10 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1261 1-min values rejected as stack air" [1] "0 out of 1261 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"