[1] "2025-04-29 23:30:03 MDT" [1] "1503" "150326" "d085" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150326a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85080 63 [1] 85080 [1] 85080 [1] "testing skipping spike filter" [1] 85080 [1] 85080 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:30:07 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.833, ave o2scale2 = 0.751" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.833, ave o2scale2 = 0.751" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:30:07 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:30:07 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:30:28 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:30:29 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1417 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:30:32 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.954 co2off = 406.54 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 205 214 0.1426253 0.1488881 0.1464541 3 -31.327516 267.9475 3 4 215 224 0.1495834 0.1558428 0.1534089 3 -2.321430 122.2098 4 3 225 234 0.1565382 0.1627975 0.1617542 3 -13.784563 217.8518 6 4 486 495 0.3515498 0.3578090 0.3553747 2 -2.400539 119.9278 7 2 496 505 0.3585045 0.3647674 0.3623331 2 -31.389617 271.2822 9 2 786 795 0.5602303 0.5664900 0.5640559 3 -31.479375 269.5899 10 4 796 805 0.5671854 0.5734512 0.5710147 3 -2.500164 118.5681 11 5 806 815 0.5741466 0.5804098 0.5793668 NA -13.130469 181.0829 12 3 816 825 0.5811054 0.5873651 0.5863216 3 -13.942945 216.3752 14 4 1086 1095 0.7689302 0.7751930 0.7727565 2 -2.525695 137.2583 15 2 1096 1105 0.7758884 0.7821477 0.7797133 2 -31.524398 275.9601 17 2 1386 1395 0.9776098 0.9838727 0.9814384 3 -31.614234 267.1780 18 4 1396 1405 0.9845679 0.9908266 0.9883927 3 -2.618016 118.7147 19 3 1406 1415 0.9915220 0.9977816 0.9967386 3 -14.096148 218.9228 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.204857 1.335616 -9.212421e-04 -0.24793728 0.0033525627 4.168530 3 1.204803 1.335519 3.306939e-03 -0.03788992 0.0097782008 1.356023 4 1.204978 1.335701 3.154860e-03 -3.88138087 0.0077703506 5.467999 6 1.202297 1.332770 1.039407e-03 -1.60499399 0.0028246637 4.718870 7 1.202400 1.332889 -2.819500e-03 -1.15448544 0.0075829076 3.498911 9 1.200186 1.330073 -3.542162e-03 0.48924147 0.0090108442 2.524283 10 1.200058 1.330008 -4.916883e-05 -0.68463009 0.0047289167 2.652928 11 1.200142 1.330103 9.362906e-04 -1.13210281 0.0006629126 2.324440 12 1.200211 1.330190 2.547531e-03 -0.42765847 0.0100706454 1.368221 14 1.198215 1.328100 -2.013394e-03 7.29274673 0.0057143145 25.232323 15 1.198186 1.327968 -9.904538e-04 -1.09372680 0.0083015797 4.715072 17 1.193175 1.322097 1.352031e-04 1.05576035 0.0015937062 10.661390 18 1.192807 1.321686 -5.935139e-06 0.31582985 0.0029428617 4.829724 19 1.192794 1.321506 3.263785e-03 6.91183847 0.0090050790 9.460318 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 406.591 co2l1 = 0.952 co2l0 = 0.023" [1] "co2l0 = -140.57 co2l1 = 0.216" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "5 out of 5 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1243 1-min values rejected as stack air" [1] "0 out of 1243 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"