[1] "2025-04-29 23:29:27 MDT" [1] "1503" "150325" "d084" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150325a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:29:31 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.829, ave o2scale2 = 0.748" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "41 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.829, ave o2scale2 = 0.748" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "44 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:29:32 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:29:32 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:29:53 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:29:54 MDT" [1] "reading in recalculated plot titles" [1] "Removed 44 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1392 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:29:58 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.954 co2off = 410.9 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.94 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 128 136 0.09979754 0.1053615 0.1032753 2 -2.093464 118.7657 3 2 137 146 0.10605689 0.1123198 0.1098850 2 -31.100844 270.3948 5 2 404 413 0.30778828 0.3140517 0.3116163 3 -31.100422 269.3517 6 4 414 423 0.31474699 0.3210104 0.3185743 3 -2.119219 120.7259 7 5 424 433 0.32170602 0.3279670 0.3269230 NA -12.662000 180.3449 8 3 434 443 0.32866259 0.3349217 0.3338787 3 -13.569703 218.0423 10 4 698 707 0.51651968 0.5227790 0.5203446 2 -2.061430 122.6463 11 2 708 717 0.52347454 0.5297338 0.5272998 2 -31.040586 262.4824 13 2 998 1007 0.72522917 0.7314931 0.7290571 3 -31.090367 265.8707 14 4 1008 1017 0.73218851 0.7384479 0.7360134 3 -2.090641 119.5210 15 3 1018 1027 0.73914352 0.7454028 0.7443594 3 -13.549922 214.2594 17 4 1298 1307 0.93393521 0.9401946 0.9377607 2 -2.231516 119.6620 18 2 1308 1317 0.94089005 0.9471494 0.9447152 2 -31.233469 273.8117 19 5 1318 1327 0.94784494 0.9541047 0.9530614 NA -12.682563 180.7762 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.198622 1.327837 -0.0005528213 0.6560985 0.002150235 3.031984 3 1.198796 1.328025 -0.0049581273 0.5206326 0.012788806 4.309588 5 1.204291 1.334660 -0.0021811995 -0.9351674 0.006213801 2.636981 6 1.204323 1.334703 -0.0008074028 2.5340437 0.005528740 7.829539 7 1.204723 1.335171 0.0042448708 1.0942802 0.003005204 5.828392 8 1.205260 1.335660 0.0038959517 -1.7854097 0.010037638 4.730995 10 1.211045 1.342284 0.0030956137 2.9659982 0.008192878 8.772788 11 1.211296 1.342597 -0.0020039455 -2.6575492 0.006680524 9.952472 13 1.211346 1.342975 0.0022828915 -2.0574516 0.006236542 7.169735 14 1.211401 1.343021 0.0029386941 0.9733567 0.007437894 5.165793 15 1.211502 1.343119 0.0030532563 4.7123861 0.008143506 6.263414 17 1.208757 1.340125 -0.0010505579 0.1391984 0.002957427 4.250355 18 1.208763 1.340153 -0.0043746469 0.1183665 0.011917733 1.760540 19 1.208333 1.339664 0.0003742515 0.2607627 0.000265165 2.189488 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 406.255 co2l1 = 0.952 co2l0 = 0.021" [1] "co2l0 = -139.68 co2l1 = 0.215" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "18 out of 150 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "132 out of 1201 1-min values rejected as stack air" [1] "132 out of 1201 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"