[1] "2025-04-29 23:28:53 MDT" [1] "1503" "150324" "d083" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150324a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:28:57 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.837, ave o2scale2 = 0.756" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "300 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.837, ave o2scale2 = 0.756" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "300 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:28:58 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:28:58 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:29:18 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:29:19 MDT" [1] "reading in recalculated plot titles" [1] "Removed 300 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1136 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:29:23 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -478" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.952 co2off = 401.21 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.15 minutes" [1] "Shortest Cal: 2 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 8 [4,] 9 9 [5,] 10 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 74 83 0.05545023 0.06170946 0.05927510 3 -30.733844 266.9689 3 4 84 93 0.06240509 0.06866814 0.06623105 3 -1.729812 123.5269 4 5 94 103 0.06936348 0.07562650 0.07458145 NA -12.267375 184.1151 5 3 104 113 0.07632187 0.08258108 0.08153775 3 -13.192445 213.6793 7 4 348 356 0.26420168 0.27047685 0.26798872 2 -1.823814 120.5351 8 2 357 362 0.27395486 0.27743183 0.27638878 2 -30.826000 272.1183 10 2 565 569 0.47291560 0.47778446 0.47708901 2 -30.991158 267.1859 11 4 570 574 0.48196082 0.48613776 0.48544004 2 -1.995896 127.1228 15 2 758 765 0.69006241 0.69493056 0.69319174 1 -31.242000 273.0822 18 2 990 996 0.89247338 0.89664583 0.89525488 3 -31.137725 266.4633 19 4 997 1006 0.89734476 0.90360784 0.90117054 3 -2.131500 127.1989 20 3 1007 1015 0.90430324 0.91056262 0.90986706 3 -13.608150 212.5419 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.207746 1.337864 -7.918852e-04 -0.39224952 0.0032744615 2.1907295 3 1.208007 1.338144 3.140484e-03 -0.75068840 0.0083263512 3.2315053 4 1.208194 1.338272 -2.354756e-15 -1.77762296 0.0000000000 3.0853309 5 1.208182 1.338264 3.571646e-03 1.97271628 0.0088522367 3.2574484 7 1.204401 1.334252 1.512378e-03 0.03675066 0.0051779432 2.2203287 8 1.203900 1.333682 3.395422e-03 1.13416585 0.0044555092 1.5671532 10 1.194674 1.323845 -3.195857e-03 -0.71930572 0.0033695958 0.7203697 11 1.194141 1.323295 8.713450e-04 -2.25673737 0.0008757437 2.2662831 15 1.179311 1.306841 -2.000516e-03 0.96097545 0.0042926172 3.7183602 18 1.191368 1.320030 2.809032e-04 3.59965981 0.0016913151 5.9304787 19 1.191619 1.320240 5.372787e-04 0.22667389 0.0026701057 3.4811195 20 1.191714 1.320394 2.752379e-03 4.40795368 0.0077130912 4.4238446 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 406.127 co2l1 = 0.952 co2l0 = 0.017" [1] "co2l0 = -141.98 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "96 out of 350 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "254 out of 965 1-min values rejected as stack air" [1] "254 out of 965 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"