[1] "2025-04-29 23:28:18 MDT" [1] "1503" "150323" "d082" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150323a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:28:22 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.825, ave o2scale2 = 0.745" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "28 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.825, ave o2scale2 = 0.745" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "28 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:28:23 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:28:23 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:28:43 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:28:44 MDT" [1] "reading in recalculated plot titles" [1] "Removed 28 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1408 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:28:48 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.953 co2off = 405.78 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 17 26 0.01200194 0.01826157 0.01582722 2 -1.501008 124.3657 3 2 27 36 0.01895712 0.02521875 0.02278380 2 -30.488406 271.4064 5 2 317 326 0.22073727 0.22700072 0.22456642 3 -30.477266 268.9342 6 4 327 336 0.22769621 0.23395605 0.23152177 3 -1.514195 120.1612 7 3 337 346 0.23465162 0.24091519 0.23987195 3 -12.985141 217.4552 9 4 614 623 0.42941785 0.43567708 0.43324304 2 -1.529133 122.0444 10 2 624 633 0.43637271 0.44263200 0.44019776 2 -30.511555 264.8141 13 2 913 922 0.63809838 0.64436111 0.64192599 3 -30.577758 266.9094 14 4 923 932 0.64505671 0.65131606 0.64888183 3 -1.611672 123.4062 15 3 933 942 0.65201163 0.65827083 0.65722770 3 -13.082789 214.8095 17 4 1210 1219 0.84677358 0.85303356 0.85059900 2 -1.658391 125.0844 18 2 1220 1229 0.85372899 0.85999181 0.85755646 2 -30.660445 267.3063 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.208583 1.338490 0.0020467762 -0.92479863 0.006906457 4.208765 3 1.208837 1.338762 -0.0013668184 -2.48713729 0.006133558 7.277320 5 1.213013 1.343414 -0.0018379197 0.12793560 0.005799453 6.375825 6 1.212858 1.343236 0.0029353066 0.17728994 0.008055086 2.042819 7 1.212844 1.343236 0.0018349187 2.68855330 0.006192391 3.701726 9 1.214223 1.344693 0.0004154199 1.31420651 0.005110109 3.861625 10 1.214491 1.344982 -0.0031241128 0.03045041 0.009178685 3.737318 13 1.213689 1.344142 -0.0019372264 -2.28093145 0.005508662 6.454243 14 1.213446 1.343920 0.0004397632 -0.32668760 0.004252199 2.125597 15 1.213458 1.343937 0.0016100623 1.62053045 0.004913872 2.198532 17 1.211526 1.341871 0.0011112640 0.36220213 0.003928313 3.236813 18 1.211612 1.341975 -0.0027174962 -0.85396563 0.010722059 3.025725 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 405.73 co2l1 = 0.953 co2l0 = 0.004" [1] "co2l0 = -140.83 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "8 out of 35 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "27 out of 1226 1-min values rejected as stack air" [1] "27 out of 1226 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"