[1] "2025-04-29 23:27:42 MDT" [1] "1503" "150322" "d081" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150322a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:27:46 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.832, ave o2scale2 = 0.751" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "7 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.832, ave o2scale2 = 0.751" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "9 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:27:47 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:27:47 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:28:08 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:28:09 MDT" [1] "reading in recalculated plot titles" [1] "Removed 9 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1427 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:28:13 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.955 co2off = 405.64 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.01 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 248 257 0.1772834 0.1835428 0.1811085 2 -1.096312 120.7304 3 2 258 267 0.1842384 0.1904977 0.1880634 2 -30.100484 265.1241 4 5 268 277 0.1911933 0.1974525 0.1964091 NA -11.680156 178.8369 6 2 548 557 0.3859798 0.3922391 0.3898050 3 -30.250602 272.2475 7 4 558 567 0.3929345 0.3991944 0.3967600 3 -1.282070 130.7005 8 3 568 577 0.3998897 0.4061493 0.4051060 3 -12.755734 216.9776 10 4 848 857 0.5946598 0.6009228 0.5984867 2 -1.434555 124.7470 11 2 858 867 0.6016182 0.6078774 0.6054434 2 -30.423047 271.0015 13 2 1145 1154 0.8033333 0.8095961 0.8071616 3 -30.507328 277.5868 14 4 1155 1164 0.8102915 0.8165509 0.8141168 3 -1.509375 121.3400 15 5 1165 1174 0.8172465 0.8235058 0.8224624 NA -11.858219 184.1677 16 3 1175 1184 0.8242014 0.8304606 0.8294172 3 -12.972477 225.5379 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.201317 1.330638 -0.0028689534 1.4803875 0.0084739622 6.393349 3 1.201503 1.330847 -0.0043148415 0.2931705 0.0123058017 4.636915 4 1.201524 1.330895 -0.0014346904 -1.5456909 0.0010164660 2.529406 6 1.200340 1.329640 -0.0018343045 0.6750213 0.0048171867 13.434375 7 1.200064 1.329364 0.0026113547 2.0565606 0.0088199650 7.509132 8 1.199952 1.329234 0.0004070749 -3.5269985 0.0032317050 6.270484 10 1.199449 1.328665 0.0016543042 1.9267307 0.0045525745 5.080765 11 1.199593 1.328833 -0.0022914699 -2.4132274 0.0065915386 7.571052 13 1.202315 1.331819 -0.0010269717 -6.4353869 0.0045439017 21.357030 14 1.202384 1.331900 0.0002930357 1.9172611 0.0073900422 11.998991 15 1.202689 1.332263 -0.0008112156 1.9827128 0.0005745243 3.549955 16 1.202819 1.332395 -0.0010245218 5.9932891 0.0043668211 8.375951 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 405.507 co2l1 = 0.952 co2l0 = 0.009" [1] "co2l0 = -140.75 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "5 out of 5 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1260 1-min values rejected as stack air" [1] "0 out of 1260 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"