[1] "2025-04-29 23:27:21 MDT" [1] "1503" "150321" "d080" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150321a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 70697 63 [1] 70697 [1] 70697 [1] "testing skipping spike filter" [1] 70697 [1] 70697 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:27:25 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.83, ave o2scale2 = 0.75" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 3 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 2 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 2 MR FC 2 jog(s) with SP SD > 1000" [1] "77 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.83, ave o2scale2 = 0.75" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 3 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 2 RC FC 2 jog(s) with SP SD > 1000" [1] "80 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:27:25 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:27:25 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:27:35 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:27:36 MDT" [1] "reading in recalculated plot titles" [1] "Removed 80 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 18 row(s) with variable TFCELL" [1] "TEMP: 1079 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:27:38 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.954 co2off = 405.2 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.83 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 7 8 [4,] 9 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 226 235 0.3897173 0.3959803 0.3935430 2 -1.5173359 122.4944 3 2 236 245 0.3966759 0.4029348 0.4005006 2 -30.4466563 272.5940 5 3 436 443 0.5524465 0.5573147 0.5569670 3 -12.5165833 230.0021 6 2 444 453 0.5580100 0.5642720 0.5618378 3 -30.0324219 276.9287 7 4 454 463 0.5649675 0.5712269 0.5687925 3 -1.0477578 116.9274 8 5 464 473 0.5719224 0.5781852 0.5771409 NA -11.9398438 178.5236 10 4 734 743 0.7597385 0.7660102 0.7635681 2 -0.8533906 115.4008 11 2 744 753 0.7667055 0.7729644 0.7705304 2 -29.8274141 277.6296 13 2 1034 1043 0.9684225 0.9746817 0.9722474 3 -29.8912578 269.4506 14 4 1044 1053 0.9753771 0.9816365 0.9792022 3 -0.9103516 116.7758 15 3 1054 1063 0.9823319 0.9885915 0.9875481 3 -12.3792500 209.4379 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.205002 1.332887 -0.0003527447 -0.07213376 0.001683672 3.334503 3 1.205190 1.333115 -0.0007725738 -0.37961941 0.005983236 4.121985 5 1.204486 1.333348 0.0041362995 7.42742291 0.008867397 5.259640 6 1.204596 1.333665 0.0010816157 3.45536077 0.007160995 15.523559 7 1.204625 1.333821 0.0037730828 -1.40197254 0.009506896 17.858973 8 1.204678 1.334042 0.0029328563 0.12445991 0.002077126 11.213271 10 1.204202 1.333225 -0.0025648690 0.31744664 0.006638779 3.056677 11 1.204207 1.333214 -0.0019933165 0.35076325 0.005422438 6.448389 13 1.203375 1.332809 -0.0013766248 -1.35157624 0.004414040 5.261515 14 1.203184 1.332591 0.0003839874 -0.81091124 0.005607805 3.643981 15 1.203241 1.332679 -0.0006447544 -3.36002334 0.002726155 5.198235 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 405.272 co2l1 = 0.953 co2l0 = 0.011" [1] "co2l0 = -137.81 co2l1 = 0.203" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "108 out of 380 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "272 out of 929 1-min values rejected as stack air" [1] "272 out of 929 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"