[1] "2017-04-06 18:47:41 MDT"
[1] "1503"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1503/150321.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1503/150322.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1503/150323.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1503/150324.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1503/150325.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1503/150326.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1503/150327.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1503/150328.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1503/150329.html"  
[10] "/net/www/docs/homes/stephens/GO2/1503/150330.html"  
[11] "/net/www/docs/homes/stephens/GO2/1503/150331.html"  
[12] "/net/www/docs/homes/stephens/GO2/1503/150401.html"  
[13] "/net/www/docs/homes/stephens/GO2/1503/150402.html"  
[14] "/net/www/docs/homes/stephens/GO2/1503/150403.html"  
[15] "/net/www/docs/homes/stephens/GO2/1503/lmg_1503.html"
 [1] "/net/www/docs/homes/stephens/GO2/1503/150321.html"
 [2] "/net/www/docs/homes/stephens/GO2/1503/150322.html"
 [3] "/net/www/docs/homes/stephens/GO2/1503/150323.html"
 [4] "/net/www/docs/homes/stephens/GO2/1503/150324.html"
 [5] "/net/www/docs/homes/stephens/GO2/1503/150325.html"
 [6] "/net/www/docs/homes/stephens/GO2/1503/150326.html"
 [7] "/net/www/docs/homes/stephens/GO2/1503/150327.html"
 [8] "/net/www/docs/homes/stephens/GO2/1503/150328.html"
 [9] "/net/www/docs/homes/stephens/GO2/1503/150329.html"
[10] "/net/www/docs/homes/stephens/GO2/1503/150330.html"
[11] "/net/www/docs/homes/stephens/GO2/1503/150331.html"
[12] "/net/www/docs/homes/stephens/GO2/1503/150401.html"
[13] "/net/www/docs/homes/stephens/GO2/1503/150402.html"
[14] "/net/www/docs/homes/stephens/GO2/1503/150403.html"
[1] "150321" "150403"
 [1] "150321" "150322" "150323" "150324" "150325" "150326" "150327" "150328"
 [9] "150329" "150330" "150331" "150401" "150402" "150403"
[1] "000000" "999999"
[1] "150321_mr_proc.txt, 150321_cal_periods.txt, 150321_cal_param.txt,1079jogs"
[1] "150322_mr_proc.txt, 150322_cal_periods.txt, 150322_cal_param.txt,1427jogs"
[1] "150323_mr_proc.txt, 150323_cal_periods.txt, 150323_cal_param.txt,1408jogs"
[1] "150324_mr_proc.txt, 150324_cal_periods.txt, 150324_cal_param.txt,1136jogs"
[1] "150325_mr_proc.txt, 150325_cal_periods.txt, 150325_cal_param.txt,1392jogs"
[1] "150326_mr_proc.txt, 150326_cal_periods.txt, 150326_cal_param.txt,1417jogs"
[1] "150327_mr_proc.txt, 150327_cal_periods.txt, 150327_cal_param.txt,1428jogs"
[1] "150328_mr_proc.txt, 150328_cal_periods.txt, 150328_cal_param.txt,1394jogs"
[1] "150329_mr_proc.txt, 150329_cal_periods.txt, 150329_cal_param.txt,1425jogs"
[1] "150330_mr_proc.txt, 150330_cal_periods.txt, 150330_cal_param.txt,1396jogs"
[1] "150331_mr_proc.txt, 150331_cal_periods.txt, 150331_cal_param.txt,1348jogs"
[1] "150401_mr_proc.txt, 150401_cal_periods.txt, 150401_cal_param.txt,1422jogs"
[1] "150402_mr_proc.txt, 150402_cal_periods.txt, 150402_cal_param.txt,1369jogs"
[1] "150403_mr_proc.txt, 150403_cal_periods.txt, 150403_cal_param.txt,1008jogs"
[1] "150321" "150403" "d080"   "d093"  
[1] "Calculating derived concentration values"
[1] "2017-04-06 18:48:07 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.844, ave o2scale2 = 0.761"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-04-06 18:48:30 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-04-06 18:48:56 MDT"
[1] "2017-04-06 18:49:01 MDT"
[1] "Reading in cylinder log"
Read 68 records
[1] "Finding cylinder IDs"
Read 420 records
[1] "position 1 cylinder CC339495 description: HS CO2 = 376.46 O2 = -484"
[1] "position 2 cylinder CA07671 description: MS CO2 = 393.12 O2 = -532.4"
[1] "position 3 cylinder CC339490 description: LS CO2 = 404.04 O2 = -643.3"
[1] "position 4 cylinder CC332564 description: LT CO2 = 393.91 O2 = -579.3"
[1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.32 O2 = -763"
[1] "Plotting jog shapes"
[1] "1503 Valve transient for  Line 1 after Line 2 = -1.5 , -1.69 , -2 , -2.03 , -1.88 n = 1"
[1] "1503 Valve transient for  Line 1 after Cal = -0.8 , -0.36 , -0.03 , -0.01 , -0.02 n = 62"
[1] "1503 Valve transient for  Line 2 after Line 1 = 2.94 , 2.11 , 0.67 , 0.04 , 0.01 n = 1"
[1] "1503 Valve transient for  Line 2 after Cal = -1.86 , -1.35 , -0.47 , -0.09 , -0.08 n = 1"
[1] "1503 Valve transient for  Line 1 after HS = -1.15 , -0.57 , 0.03 , 0.03 , -0.01 n = 22"
[1] "1503 Valve transient for  Line 1 after MS = -0.18 , -0.1 , -0.02 , -0.02 , -0.02 n = 29"
[1] "1503 Valve transient for  Line 1 after LT = -1.98 , -1.36 , -0.42 , -0.04 , -0.02 n = 11"
[1] "1503 Valve transient for  Line 2 after MS = -0.61 , -0.54 , -0.43 , -0.31 , -0.01 n = 1"
[1] "1503 Valve transient for  Line 2 after LT = -1.86 , -1.35 , -0.47 , -0.09 , -0.08 n = 1"
[1] "1503 Valve transient for  HS after Line 1 = 1.13 , 0.57 , 0.01 , 0 , 0 n = 25"
[1] "1503 Valve transient for  HS after Line 2 = 1.05 , 0.53 , 0.01 , 0 , 0 n = 1"
[1] "1503 Valve transient for  HS after MS = 2.68 , 1.34 , 0 , 0 , -0.01 n = 1"
[1] "1503 Valve transient for  HS after LS = 4.46 , 2.24 , 0.02 , 0.01 , 0 n = 27"
[1] "1503 Valve transient for  MS after Line 1 = -0.02 , -0.01 , -0.01 , 0 , 0 n = 1"
[1] "1503 Valve transient for  MS after LS = 1.73 , 0.86 , -0.02 , -0.01 , -0.01 n = 16"
[1] "1503 Valve transient for  MS after LT = 1.07 , 0.52 , -0.02 , -0.02 , -0.01 n = 9"
[1] "1503 Valve transient for  LS after Line 1 = -1.5 , -0.75 , 0 , 0 , 0 n = 25"
[1] "1503 Valve transient for  LS after HS = -4.45 , -2.24 , -0.01 , 0 , 0 n = 27"
[1] "1503 Valve transient for  LT after HS = -0.97 , -0.48 , 0.02 , 0.01 , 0.01 n = 8"
[1] "1503 Valve transient for  LT after LS = 0.58 , 0.29 , 0 , 0.01 , 0.01 n = 10"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "297 out of 2245 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "1948 out of 16191 1-min values rejected as stack air"
[1] "1851 out of 15887 Line 1 1-min values rejected as stack air"
[1] "97 out of 304 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1503loxy.d080"
[1] "LMG1503loxy.d081"
[1] "LMG1503loxy.d082"
[1] "LMG1503loxy.d083"
[1] "LMG1503loxy.d084"
[1] "LMG1503loxy.d090"
[1] "LMG1503loxy.d091"
[1] "LMG1503loxy.d092"
[1] "LMG1503loxy.d093"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,]  92.5 0.1390821
 [2,]  97.5 0.1390821
 [3,] 102.5 0.1390821
 [4,] 107.5 0.1390821
 [5,] 117.5 0.1390821
 [6,] 122.5 0.2781641
 [7,] 127.5 0.2781641
 [8,] 132.5 0.2781641
 [9,] 137.5 0.5563282
[10,] 142.5 0.2781641
[11,] 147.5 0.2781641
[12,] 157.5 0.1390821
[13,] 162.5 0.1390821
[14,] 167.5 0.4172462
[15,] 172.5 0.5563282
[16,] 177.5 0.4172462
[17,] 182.5 0.6954103
[18,] 187.5 0.8344924
[19,] 192.5 0.5563282
[20,] 197.5 0.4172462
[21,] 202.5 0.2781641
[22,] 207.5 0.1390821
[23,] 212.5 0.4172462
[24,] 217.5 0.2781641
[25,] 222.5 0.2781641
[26,] 227.5 0.2781641
[27,] 232.5 0.2781641
[28,] 237.5 0.1390821
[29,] 242.5 0.4172462
[30,] 247.5 0.6954103
[31,] 252.5 1.2517385
[32,] 257.5 0.8344924
[33,] 262.5 0.9735744
[34,] 267.5 0.4172462
[35,] 272.5 0.4172462
[36,] 277.5 0.1390821
[37,] 282.5 0.5563282
[38,] 287.5 0.8344924
[39,] 292.5 0.2781641
[40,] 307.5 0.1390821
[41,] 317.5 0.1390821
[42,] 322.5 0.2781641
[43,] 327.5 0.1390821
[44,] 332.5 0.4172462
[45,] 337.5 0.2781641
[46,] 342.5 0.1390821
[47,] 347.5 0.6954103
[48,] 352.5 0.4172462
[49,] 357.5 0.5563282
[50,] 362.5 0.9735744
[51,] 367.5 0.5563282
[52,] 372.5 0.4172462
[53,] 377.5 0.5563282
[54,] 382.5 1.2517385
[55,] 387.5 0.2781641
[56,] 392.5 0.5563282
[57,] 397.5 0.9735744
[58,] 402.5 0.2781641
[59,] 407.5 0.2781641
[60,] 412.5 0.1390821
[61,] 417.5 0.1390821
[62,] 422.5 0.4172462
[63,] 427.5 0.2781641
[64,] 432.5 0.1390821
[65,] 437.5 0.1390821
[66,] 442.5 0.5563282
[67,] 447.5 0.1390821
       [,1]      [,2]
 [1,] 102.5 0.1390821
 [2,] 112.5 0.1390821
 [3,] 117.5 0.2781641
 [4,] 122.5 0.5563282
 [5,] 127.5 0.2781641
 [6,] 132.5 0.4172462
 [7,] 137.5 0.2781641
 [8,] 147.5 0.1390821
 [9,] 172.5 0.1390821
[10,] 187.5 0.4172462
[11,] 192.5 0.8344924
[12,] 197.5 0.4172462
[13,] 202.5 1.1126565
[14,] 207.5 0.9735744
[15,] 212.5 3.3379694
[16,] 217.5 4.4506259
[17,] 222.5 1.9471488
[18,] 227.5 1.2517385
[19,] 232.5 0.9735744
[20,] 237.5 0.8344924
[21,] 242.5 0.4172462
[22,] 247.5 0.4172462
[23,] 257.5 0.1390821
[24,] 272.5 0.1390821
[25,] 277.5 0.2781641
[26,] 282.5 0.9735744
[27,] 287.5 0.5563282
[28,] 292.5 0.5563282
[29,] 297.5 1.5299026
[30,] 302.5 1.6689847
[31,] 307.5 0.4172462
[32,] 312.5 1.1126565
[33,] 317.5 1.8080668
[34,] 322.5 2.9207232
[35,] 327.5 7.9276773
[36,] 332.5 5.8414465
[37,] 337.5 1.2517385
[38,] 342.5 0.4172462
[39,] 347.5 0.4172462
[40,] 352.5 0.5563282
[41,] 357.5 0.8344924
[42,] 362.5 0.4172462
[43,] 367.5 0.9735744
[44,] 372.5 0.8344924
[45,] 377.5 0.4172462
[46,] 382.5 1.2517385
[47,] 387.5 0.2781641
[48,] 392.5 0.4172462
[49,] 397.5 0.4172462
[50,] 402.5 0.2781641
[51,] 407.5 0.2781641
[52,] 417.5 0.1390821
[53,] 447.5 0.0000000
       [,1]      [,2]
 [1,] 207.5 0.1390821
 [2,] 212.5 0.9735744
 [3,] 217.5 1.2517385
 [4,] 222.5 0.2781641
 [5,] 232.5 0.1390821
 [6,] 237.5 0.1390821
 [7,] 242.5 0.2781641
 [8,] 267.5 0.2781641
 [9,] 272.5 0.1390821
[10,] 277.5 0.1390821
[11,] 282.5 0.2781641
[12,] 287.5 0.1390821
[13,] 317.5 0.2781641
[14,] 322.5 0.4172462
[15,] 327.5 0.8344924
[16,] 332.5 1.9471488
[17,] 337.5 2.0862309
[18,] 342.5 1.6689847
[19,] 347.5 0.8344924
[20,] 352.5 0.1390821
[21,] 357.5 0.2781641
[22,] 362.5 1.1126565
[23,] 367.5 0.8344924
[24,] 372.5 1.2517385
[25,] 377.5 0.1390821
[26,] 382.5 0.1390821
[27,] 392.5 0.2781641
[28,] 402.5 0.1390821
       [,1]      [,2]
 [1,] 347.5 0.1390821
 [2,] 357.5 0.1390821
 [3,] 362.5 0.2781641
 [4,] 367.5 0.4172462
 [5,] 372.5 0.1390821
 [6,] 382.5 0.0000000
 [7,] 407.5 0.1390821
 [8,] 412.5 0.2781641
 [9,] 417.5 0.1390821
[1] "making cruise html"
[1] "2017-04-06 18:49:32 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"