[1] "2025-04-29 23:23:56 MDT" [1] "1502" "150315" "d074" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150315a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:24:00 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.846, ave o2scale2 = 0.762" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "61 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.846, ave o2scale2 = 0.762" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "61 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:24:00 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:24:00 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:24:21 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:24:22 MDT" [1] "reading in recalculated plot titles" [1] "Removed 61 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1375 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:24:29 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.951 co2off = 394.68 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.73 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 7 [4,] 8 9 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 4 1 7 0.001596007 0.00576875 0.004377714 2 -1.612275 121.0719 3 3 17 26 0.015506973 0.02176626 0.020722859 2 -13.099617 208.8259 5 4 267 276 0.203385156 0.20964465 0.207210355 2 -1.538352 118.7046 6 2 277 286 0.210343750 0.21660310 0.214168906 2 -30.624094 268.1315 8 2 547 556 0.412084201 0.41834306 0.415909064 3 -30.558125 268.1725 9 4 557 566 0.419038542 0.42530156 0.422864471 3 -1.447852 120.3447 10 3 567 576 0.425996933 0.43225584 0.431212782 3 -12.954180 213.6350 12 4 837 846 0.620756887 0.62701577 0.624581673 2 -1.433203 123.6774 13 2 847 856 0.627711603 0.63397818 0.631538777 2 -30.533492 263.6642 14 5 857 866 0.634675405 0.64093406 0.639890762 NA -11.990094 180.3351 16 2 1136 1145 0.829461806 0.83572529 0.833288415 3 -30.667773 265.7046 17 4 1146 1155 0.836420718 0.84268041 0.840245877 3 -1.575273 125.5134 18 3 1156 1165 0.843375752 0.84963889 0.848594538 3 -13.094305 212.1230 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.172816 1.301185 3.519752e-03 -1.88839854 0.007548230 3.3614406 3 1.173767 1.302248 1.636526e-03 -1.46715151 0.006962306 2.6380964 5 1.180323 1.310055 2.165691e-03 1.02212470 0.005580672 6.2783456 6 1.180801 1.310627 -7.742197e-04 1.84693550 0.007847458 5.1222886 8 1.189394 1.320555 7.873762e-04 -0.45632543 0.005868918 3.0855248 9 1.189617 1.320816 1.357071e-03 0.08943643 0.007299472 2.2991238 10 1.189850 1.321096 4.136206e-03 -0.04357510 0.010226096 0.3924722 12 1.188422 1.319590 -1.570609e-03 -0.67818312 0.004463862 2.1017122 13 1.188345 1.319503 -3.212002e-03 -0.65097314 0.009729743 2.2996099 14 1.187987 1.319122 -9.549370e-03 -2.68883678 0.006761709 3.6081962 16 1.178497 1.308360 -1.204771e-03 0.90466552 0.003186351 4.3988538 17 1.178274 1.308130 5.274486e-05 0.12880970 0.004482473 3.2514578 18 1.178146 1.308018 2.576421e-03 -4.30914825 0.009168404 6.3603532 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 405.683 co2l1 = 0.949 co2l0 = 0.011" [1] "co2l0 = -140.95 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "45 out of 75 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "30 out of 1184 1-min values rejected as stack air" [1] "30 out of 1184 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"