[1] "2025-04-29 23:23:14 MDT" [1] "1502" "150314" "d073" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150314a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85721 63 [1] 85721 [1] 85721 [1] "testing skipping spike filter" [1] 85721 [1] 85721 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:23:18 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.854, ave o2scale2 = 0.77" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "64 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.854, ave o2scale2 = 0.77" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "63 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:23:19 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:23:19 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:23:40 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:23:42 MDT" [1] "reading in recalculated plot titles" [1] "Removed 63 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1363 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:23:51 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.95 co2off = 414.35 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.6 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 208 217 0.1600960 0.1663764 0.1639363 3 -30.704602 271.1443 3 4 218 227 0.1670726 0.1733412 0.1709070 3 -1.625867 120.0652 4 3 228 237 0.1740370 0.1802998 0.1792538 3 -13.145406 212.6582 6 4 498 507 0.3688106 0.3750695 0.3726356 2 -1.593477 114.6830 7 2 508 517 0.3757663 0.3820358 0.3796010 2 -30.693305 267.6557 10 2 778 787 0.5772419 0.5835012 0.5810666 3 -30.730336 267.8747 11 4 788 797 0.5841967 0.5904559 0.5880215 3 -1.626437 114.9897 12 3 798 807 0.5911515 0.5974103 0.5963672 3 -13.131445 220.5852 14 4 1073 1082 0.7859607 0.7922205 0.7897863 2 -1.621930 120.7922 15 2 1083 1091 0.7929158 0.7991755 0.7968903 2 -30.736216 269.3344 17 2 1359 1363 0.9946412 0.9981184 0.9971912 1 -30.720247 275.0345 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.171353 1.299426 -1.272463e-03 -0.1352466 0.0049780699 4.109174 3 1.171132 1.299181 1.953094e-04 -0.4470522 0.0021042680 1.445230 4 1.171039 1.299082 1.885754e-03 -0.4225853 0.0067694000 1.152006 6 1.172534 1.300707 2.159901e-03 -0.6733734 0.0057670494 11.235430 7 1.172575 1.300754 -3.261590e-03 -2.8452466 0.0089334992 10.040296 10 1.170832 1.299091 5.638224e-04 2.0199933 0.0019382019 10.638026 11 1.170831 1.299110 2.237448e-03 -1.8886239 0.0075555236 10.785076 12 1.170916 1.299241 4.023061e-03 4.5474646 0.0104866219 6.144023 14 1.170638 1.298530 -5.592994e-04 -1.3467253 0.0045985534 4.168062 15 1.170685 1.298509 -9.869193e-04 -2.9164481 0.0050130633 9.016676 17 1.172520 1.300886 -1.484408e-05 -9.6807416 0.0003098995 15.671685 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 405.771 co2l1 = 0.949 co2l0 = 0.011" [1] "co2l0 = -138.99 co2l1 = 0.211" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "36 out of 40 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "4 out of 1203 1-min values rejected as stack air" [1] "4 out of 1203 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"