[1] "2025-04-29 23:22:35 MDT" [1] "1502" "150313" "d072" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150313a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:22:39 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.855, ave o2scale2 = 0.771" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "7 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.855, ave o2scale2 = 0.771" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "7 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:22:40 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:22:40 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:23:00 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:23:01 MDT" [1] "reading in recalculated plot titles" [1] "Removed 7 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1429 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:23:09 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.951 co2off = 405.72 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 12 [5,] 13 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 4 164 173 0.1166396 0.1228989 0.1204647 2 -1.507563 119.2221 4 2 174 183 0.1235943 0.1298540 0.1274196 2 -30.618992 267.5869 5 5 184 193 0.1305494 0.1368090 0.1357656 NA -12.230125 181.8180 9 2 462 471 0.3253207 0.3315875 0.3291534 3 -30.643156 263.6822 10 4 472 481 0.3322862 0.3385458 0.3361117 3 -1.545445 122.1180 11 3 482 491 0.3392412 0.3455009 0.3444577 3 -13.053445 212.8657 14 4 762 771 0.5340093 0.5402690 0.5378350 2 -1.596203 120.3585 15 2 772 781 0.5409648 0.5472237 0.5447897 2 -30.696094 265.3057 17 2 1061 1070 0.7426701 0.7489497 0.7465109 3 -30.824961 266.6718 18 4 1071 1080 0.7496436 0.7559038 0.7534693 3 -1.704195 121.4345 19 5 1081 1090 0.7565992 0.7628591 0.7618158 NA -12.542750 184.3713 20 3 1091 1100 0.7635545 0.7698148 0.7687714 3 -13.222523 208.3473 22 4 1361 1370 0.9513794 0.9576389 0.9552044 2 -1.693961 122.6646 23 2 1371 1380 0.9583345 0.9645937 0.9621594 2 -30.818695 267.6046 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.177189 1.306214 0.0006463252 -0.66408125 0.0030762265 4.1513999 4 1.177293 1.306333 -0.0027358979 0.07698341 0.0076323470 1.8794071 5 1.177267 1.306314 0.0009982946 0.69669965 0.0007071068 1.0721383 9 1.175005 1.303540 -0.0017384641 2.52582989 0.0044233300 6.6250926 10 1.174805 1.303329 0.0024493321 0.53159472 0.0074393708 2.0514057 11 1.174765 1.303263 0.0039428213 1.35355256 0.0102295330 1.7789156 14 1.169318 1.296885 0.0002139210 -0.78942362 0.0034618053 4.0751432 15 1.169078 1.296600 -0.0010342152 -2.25533681 0.0039755110 9.4897297 17 1.161531 1.288526 -0.0036143138 -1.73421865 0.0105694946 4.9071947 18 1.161343 1.288344 0.0024342561 -0.73302372 0.0071808150 3.7912313 19 1.161389 1.288415 -0.0107338992 -1.44400834 0.0076013979 2.0053175 20 1.161404 1.288413 0.0022485258 2.10767327 0.0058079319 3.0145519 22 1.164106 1.291482 -0.0018801941 1.45159222 0.0049420681 4.2704966 23 1.164177 1.291581 -0.0018817610 -0.19306939 0.0069562919 0.7855871 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 405.765 co2l1 = 0.948 co2l0 = 0.013" [1] "co2l0 = -140.35 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "72 out of 435 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "363 out of 1229 1-min values rejected as stack air" [1] "323 out of 1024 Line 1 1-min values rejected as stack air" [1] "40 out of 205 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"