[1] "2025-04-29 23:21:56 MDT" [1] "1502" "150312" "d071" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150312a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:22:00 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.846, ave o2scale2 = 0.762" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "20 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.846, ave o2scale2 = 0.762" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "21 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:22:01 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:22:01 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:22:21 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:22:22 MDT" [1] "reading in recalculated plot titles" [1] "Removed 21 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1415 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:22:30 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.95 co2off = 400.51 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.01 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 100 108 0.07319560 0.07945553 0.07736890 3 -30.469628 269.2734 3 4 109 118 0.08015098 0.08641071 0.08397644 3 -1.390352 121.4376 4 3 119 128 0.08710790 0.09336927 0.09232592 3 -12.896453 212.1949 6 4 395 404 0.28187992 0.28813909 0.28570513 2 -1.421148 118.4784 7 2 405 414 0.28883455 0.29509427 0.29266021 2 -30.517266 264.3936 9 2 686 695 0.49055437 0.49681363 0.49437928 3 -30.529602 269.4506 10 4 696 705 0.49750903 0.50376852 0.50133410 3 -1.440117 118.5926 11 5 706 715 0.50446409 0.51072341 0.50968003 NA -12.049844 182.3858 12 3 716 725 0.51141901 0.51768171 0.51663757 3 -12.952297 210.2343 14 4 986 995 0.69924372 0.70550567 0.70307150 2 -1.466289 117.1720 15 2 996 1005 0.70620113 0.71246065 0.71002638 2 -30.565594 265.4441 17 2 1283 1292 0.90794757 0.91420703 0.91177270 3 -30.612039 265.8643 18 4 1293 1302 0.91490240 0.92116207 0.91872758 3 -1.512555 126.3425 19 3 1303 1312 0.92185744 0.92812037 0.92707700 3 -13.013586 216.2206 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.188562 1.319694 -0.0006392526 -0.35758862 0.0035356172 4.238579 3 1.188166 1.319192 0.0009812464 0.13377860 0.0064356306 2.950814 4 1.187824 1.318827 0.0036612165 -2.44354079 0.0107821234 3.441096 6 1.183261 1.313599 -0.0006010487 0.45813770 0.0032343265 4.564441 7 1.183349 1.313688 -0.0017786387 -0.04364260 0.0061961745 1.395191 9 1.182966 1.313143 -0.0008476396 -0.16073614 0.0025283962 3.224077 10 1.182726 1.312889 0.0018339813 0.91725497 0.0066048749 3.058971 11 1.182673 1.312824 -0.0008111818 0.84964185 0.0005745243 1.306412 12 1.182403 1.312466 0.0019816704 -0.73134683 0.0049930476 2.186490 14 1.179701 1.309502 0.0017630529 -0.01087822 0.0045246026 4.284136 15 1.179953 1.309808 -0.0018365836 0.82337866 0.0062842810 3.782763 17 1.178500 1.307903 -0.0001583097 0.71832046 0.0040370684 3.348919 18 1.178317 1.307726 0.0015384492 -1.15873514 0.0043466476 4.854561 19 1.178162 1.307637 0.0021395470 0.28959744 0.0064692730 5.352563 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 405.609 co2l1 = 0.949 co2l0 = 0.011" [1] "co2l0 = -139.95 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "3 out of 20 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "17 out of 1234 1-min values rejected as stack air" [1] "17 out of 1234 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"