[1] "2025-04-29 23:21:21 MDT" [1] "1502" "150311" "d070" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150311a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:21:26 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.843, ave o2scale2 = 0.759" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "1 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.843, ave o2scale2 = 0.759" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "3 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:21:26 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:21:26 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:21:45 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:21:46 MDT" [1] "reading in recalculated plot titles" [1] "Removed 3 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1433 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:21:51 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.95 co2off = 410.47 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.95 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 40 49 0.02913047 0.03539352 0.03295684 2 -1.462469 122.8518 3 2 50 59 0.03608912 0.04235208 0.03991506 2 -30.560547 262.4542 5 2 340 349 0.23784219 0.24410177 0.24166737 3 -30.483375 266.8546 6 4 350 359 0.24479716 0.25106019 0.24862543 3 -1.371820 120.8887 7 5 360 369 0.25175573 0.25801855 0.25697549 NA -12.220281 180.9360 8 3 370 379 0.25871418 0.26497387 0.26393079 3 -12.862227 204.8257 10 4 640 648 0.44724427 0.45280828 0.45072160 2 -1.337402 121.6394 11 2 649 658 0.45350359 0.45976644 0.45732970 2 -30.410414 267.7725 13 2 939 948 0.65545307 0.66171756 0.65928114 3 -30.435867 266.2960 14 4 949 958 0.66241366 0.66868374 0.66624443 3 -1.352609 119.5055 15 3 959 968 0.66938180 0.67565046 0.67460669 3 -12.849305 211.1474 17 4 1239 1248 0.86435541 0.87062101 0.86818464 2 -1.337953 120.1016 18 2 1249 1258 0.87131725 0.87758119 0.87514511 2 -30.413336 263.7327 19 5 1259 1268 0.87827778 0.88454167 0.88349762 NA -11.869313 182.6369 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.176873 1.306130 0.0025340022 -0.49036231 0.006585207 2.4089321 3 1.177132 1.306437 -0.0035303071 -0.13679537 0.009486407 2.0033281 5 1.182555 1.312744 0.0004427485 -0.86506256 0.001897190 3.5237617 6 1.182706 1.312926 0.0049904974 -0.41805581 0.013234469 1.9621951 7 1.183072 1.313338 -0.0016854634 -1.12700221 0.001193243 2.2943348 8 1.183305 1.313606 0.0052547340 -0.09781922 0.013974065 5.7500168 10 1.186569 1.317591 0.0020840130 -0.28572928 0.005341813 2.3264198 11 1.186767 1.317827 -0.0016971043 0.94781580 0.007172223 4.2755050 13 1.189180 1.320396 -0.0022572853 0.40101148 0.005768452 1.4904802 14 1.189209 1.320439 0.0025219840 -0.47278449 0.006965777 2.7610897 15 1.189257 1.320485 0.0036757733 0.17926978 0.010796641 0.4885313 17 1.191026 1.322696 0.0021866120 -0.66475037 0.006619754 2.6947652 18 1.190830 1.322501 -0.0026036094 0.45007094 0.007829085 2.1152336 19 1.190882 1.322552 -0.0033689639 -1.14316901 0.002386485 1.6923511 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 405.538 co2l1 = 0.949 co2l0 = 0.019" [1] "co2l0 = -140.36 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "48 out of 125 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "77 out of 1242 1-min values rejected as stack air" [1] "77 out of 1242 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"