[1] "2025-04-29 23:20:46 MDT" [1] "1502" "150310" "d069" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150310a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85800 63 [1] 85800 [1] 85800 [1] "testing skipping spike filter" [1] 85800 [1] 85800 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:20:50 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.853, ave o2scale2 = 0.768" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with SP SD > 1000" [1] "45 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.853, ave o2scale2 = 0.768" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "45 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:20:51 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:20:51 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:21:12 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:21:13 MDT" [1] "reading in recalculated plot titles" [1] "Removed 45 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1384 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:21:17 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.948 co2off = 405.7 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.87 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.07 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 2 2 [2,] 3 4 [3,] 5 7 [4,] 8 9 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 5 1 8 0.0008726852 0.005741204 0.00539349 NA -11.982313 183.5567 2 3 9 17 0.0064365451 0.012695631 0.01200024 1 -12.962721 212.5917 4 4 247 256 0.1942500289 0.200511053 0.19807548 2 -1.481172 120.7921 5 2 257 266 0.2012086806 0.207472222 0.20503519 2 -30.578875 263.5487 7 2 545 554 0.4030302662 0.409290596 0.40685647 3 -30.633469 272.4619 8 4 555 564 0.4099861111 0.416264294 0.41381840 3 -1.539773 117.7664 9 3 565 574 0.4169596644 0.423259259 0.42221311 3 -13.060312 213.6336 11 4 833 842 0.6113889178 0.617656192 0.61521739 2 -1.564648 122.1816 12 2 843 852 0.6183515914 0.624623900 0.62218453 2 -30.686055 274.1396 13 5 853 862 0.6253229167 0.631600174 0.63055701 NA -12.350469 179.0437 15 2 1127 1136 0.8201332465 0.826407755 0.82396624 3 -30.687336 265.3279 16 4 1137 1146 0.8271030961 0.833368142 0.83093150 3 -1.565016 121.6598 17 3 1147 1156 0.8340694155 0.840334288 0.83929087 3 -13.060164 209.8656 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.179062 1.310400 0.3032333236 1.64911369 0.214695296 1.1677514 2 1.178982 1.310208 0.0003989020 2.94637381 0.005559399 2.9550989 4 1.175929 1.304775 0.0004142695 -0.92299605 0.003062546 3.7144859 5 1.175764 1.304588 0.0004119520 0.50217492 0.005953878 2.8591907 7 1.172450 1.300630 -0.0027535331 1.47606374 0.007036496 6.4585337 8 1.172536 1.300650 0.0008402915 0.58653873 0.004120525 2.9016050 9 1.172500 1.300622 0.0014038637 -0.14275508 0.003552539 0.4196094 11 1.169914 1.297738 -0.0002844827 -0.83606293 0.002515784 4.3353923 12 1.170027 1.297873 -0.0022428455 -0.53719977 0.011289684 3.5063189 13 1.170022 1.297841 0.0026832515 0.59161373 0.001900349 0.7713392 15 1.171220 1.299518 0.0001367410 -0.09509651 0.002454028 3.2229297 16 1.171338 1.299633 0.0013207801 0.25278755 0.004610710 2.8428119 17 1.171567 1.299891 0.0025171583 1.66266568 0.007515901 3.3037716 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 405.677 co2l1 = 0.949 co2l0 = 0.011" [1] "co2l0 = -139.88 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "48 out of 105 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "57 out of 1202 1-min values rejected as stack air" [1] "57 out of 1202 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"