[1] "2025-04-29 23:20:10 MDT" [1] "1502" "150309" "d068" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150309a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86040 63 [1] 86040 [1] 86040 [1] "testing skipping spike filter" [1] 86040 [1] 86040 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:20:14 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.851, ave o2scale2 = 0.766" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "111 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.851, ave o2scale2 = 0.766" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "110 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:20:15 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:20:15 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:20:34 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:20:36 MDT" [1] "reading in recalculated plot titles" [1] "Removed 110 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 1 row(s) with LiCO2A spikes in them" [1] "TEMP: 1322 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:20:41 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.95 co2off = 411.16 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.26 minutes" [1] "Shortest Cal: 5.03 minutes" [1] "Longest Cal: 9.05 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 213 222 0.1506198 0.1568797 0.1544454 3 -30.709008 273.0931 3 4 223 232 0.1575752 0.1638349 0.1614007 3 -1.578172 119.8767 4 3 233 242 0.1645303 0.1707897 0.1697466 3 -13.088000 213.6951 7 4 513 519 0.3593288 0.3655880 0.3641972 2 -1.558461 123.2999 8 2 520 529 0.3662836 0.3725440 0.3701095 2 -30.664164 268.5040 9 5 530 539 0.3732396 0.3795023 0.3784591 NA -12.423781 186.8569 12 2 809 818 0.5677685 0.5740560 0.5716121 3 -30.605820 261.2891 13 4 819 828 0.5747546 0.5810417 0.5785963 3 -1.496523 125.8726 14 3 829 838 0.5817409 0.5880252 0.5869778 3 -13.008109 214.3533 18 4 1056 1062 0.7787665 0.7829572 0.7815605 2 -1.449937 119.4397 19 2 1063 1071 0.7836557 0.7892465 0.7871508 2 -30.550759 266.6702 21 2 1309 1314 0.9882997 0.9917917 0.9907441 2 -30.547375 266.7891 22 4 1315 1322 0.9924904 0.9973813 0.9956352 2 -1.441365 124.0527 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.167364 1.297339 -0.0003097597 0.7512369 0.004244539 5.549369 3 1.167540 1.297545 0.0005587003 -1.2387020 0.004737972 3.926439 4 1.167820 1.297863 0.0027905296 2.9302788 0.007499107 4.085253 7 1.172406 1.303091 0.0033124297 -1.2742506 0.005446521 2.963374 8 1.172681 1.303386 -0.0005013581 2.4575637 0.006235245 7.899566 9 1.172926 1.303640 -0.0044303008 0.7536361 0.003137786 1.084616 12 1.177431 1.308662 0.0011787776 -0.8236830 0.003250590 5.480210 13 1.177558 1.308759 0.0025593373 1.2626172 0.006790137 10.632088 14 1.177746 1.308968 0.0027826971 -2.6613576 0.007130461 3.598644 18 1.180368 1.312038 -0.0013050150 0.4241074 0.002153758 12.440038 19 1.180481 1.312043 -0.0022985524 -1.5966981 0.006762376 6.247078 21 1.179027 1.310396 0.0016033805 3.8093247 0.002366762 5.037793 22 1.179045 1.310395 0.0017795175 1.4403347 0.007179116 2.785369 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 405.664 co2l1 = 0.948 co2l0 = 0.013" [1] "co2l0 = -140.76 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "33 out of 225 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "192 out of 1150 1-min values rejected as stack air" [1] "159 out of 935 Line 1 1-min values rejected as stack air" [1] "33 out of 215 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"