[1] "2025-04-29 23:19:32 MDT" [1] "1502" "150308" "d067" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150308a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:19:36 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.86, ave o2scale2 = 0.774" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "68 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.86, ave o2scale2 = 0.774" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "68 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:19:37 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:19:37 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:19:57 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:19:58 MDT" [1] "reading in recalculated plot titles" [1] "Removed 68 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1368 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:20:05 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.948 co2off = 405.77 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.8 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 9.05 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 10 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 151 159 0.1071655 0.1134250 0.1110405 2 -1.572679 122.1202 3 2 160 168 0.1141205 0.1203796 0.1179954 2 -30.700991 265.1804 4 5 169 178 0.1210752 0.1273352 0.1262921 NA -12.414437 180.2465 6 2 409 418 0.3158653 0.3221247 0.3196904 3 -30.761867 265.0247 7 4 419 428 0.3228200 0.3290832 0.3266460 3 -1.620766 121.1193 8 3 429 438 0.3297786 0.3360409 0.3349952 3 -13.152719 207.5523 11 4 705 714 0.5245428 0.5308029 0.5283680 2 -1.645344 122.1115 12 2 715 724 0.5314980 0.5377609 0.5353246 2 -30.771844 266.1204 15 2 995 1004 0.7332280 0.7394874 0.7370531 2 -30.740336 264.1558 16 4 1005 1014 0.7401835 0.7464688 0.7440212 2 -1.620211 124.7368 17 5 1015 1024 0.7471642 0.7534234 0.7523801 NA -12.424844 178.5347 20 4 1285 1294 0.9419280 0.9481875 0.9457530 2 -1.605008 122.0121 21 2 1295 1304 0.9488831 0.9551424 0.9527080 2 -30.729305 272.4622 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.167545 1.297488 1.810880e-03 -0.2348382 0.005448436 7.600135 3 1.167252 1.297136 -4.152781e-03 -0.4871145 0.011249157 5.144644 4 1.166801 1.296673 -2.371936e-03 -0.3586505 0.001679379 3.260074 6 1.160999 1.290643 9.431008e-05 0.5537779 0.004803556 5.022592 7 1.160858 1.290487 2.157996e-03 1.9010208 0.007687083 6.646853 8 1.160790 1.290456 3.078809e-03 -4.0200690 0.008305616 5.315500 11 1.160832 1.290564 -2.905841e-03 1.7504963 0.008266623 5.140839 12 1.160946 1.290701 -9.882190e-04 0.3450722 0.005707627 2.411734 15 1.162567 1.292078 7.169538e-04 0.1535757 0.002736562 4.366303 16 1.162537 1.292040 1.258466e-03 2.5337472 0.007135091 7.400490 17 1.162626 1.292155 -5.555093e-03 -1.5890110 0.003933281 2.236567 20 1.164874 1.294611 -3.494153e-05 -0.5682529 0.003601438 3.684865 21 1.165045 1.294819 -1.428482e-03 0.5033080 0.006933794 3.288234 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 405.769 co2l1 = 0.948 co2l0 = 0.008" [1] "co2l0 = -140.79 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "12 out of 95 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "83 out of 1177 1-min values rejected as stack air" [1] "64 out of 971 Line 1 1-min values rejected as stack air" [1] "19 out of 206 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"