[1] "2025-04-29 23:19:03 MDT" [1] "1502" "150307" "d066" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150307a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85460 63 [1] 85460 [1] 85460 [1] "testing skipping spike filter" [1] 85460 [1] 85460 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:19:07 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.849, ave o2scale2 = 0.764" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "87 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.849, ave o2scale2 = 0.764" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "87 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:19:08 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:19:08 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:19:21 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:19:23 MDT" [1] "reading in recalculated plot titles" [1] "Removed 87 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 1 row(s) with variable TFCELL" [1] "TEMP: 1334 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:19:27 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.95 co2off = 418.41 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.08 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Removed 1 anomalous calibration row(s)" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 5 [3,] 6 7 [4,] 8 10 [5,] 12 13 [6,] 14 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 2 1 6 0.001412037 0.004891204 0.003846701 1 -30.519438 262.8265 3 2 280 289 0.200393142 0.206652778 0.204218566 3 -30.551508 267.6432 4 4 290 299 0.207348380 0.213607639 0.211173239 3 -1.440891 123.2438 5 5 300 309 0.214303241 0.220562471 0.219519090 NA -12.280219 182.4938 6 3 310 319 0.221257812 0.227520833 0.226477467 3 -12.957352 216.5958 8 4 578 587 0.409143547 0.415403270 0.412969227 2 -1.433922 122.9940 9 2 588 597 0.416098524 0.422371672 0.419930100 2 -30.538977 270.8008 11 3 654 658 0.484389323 0.487176447 0.487873389 3 -12.982063 245.3605 12 2 659 668 0.487874045 0.494149219 0.491706858 3 -30.572078 268.7570 13 4 669 678 0.494845631 0.501107639 0.498673604 3 -1.460539 133.4417 14 5 679 688 0.501803241 0.508062500 0.507019481 NA -12.567531 184.4588 16 4 941 950 0.689618345 0.695878443 0.693444007 2 -1.444086 118.3368 17 2 951 960 0.696573756 0.702833333 0.700399009 2 -30.568562 265.8959 19 2 1212 1221 0.898377807 0.904648785 0.902209943 2 -30.614141 265.3860 20 4 1222 1227 0.905346065 0.908829659 0.907784310 2 -1.502453 124.1769 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.181322 1.312034 0.0025569769 -0.39144770 0.003819836 1.213811 3 1.179747 1.310353 -0.0012964660 -0.55395180 0.003597252 2.506901 4 1.179598 1.310187 0.0019878895 -0.28335746 0.006972022 2.514838 5 1.179492 1.310081 -0.0020591539 -1.49795662 0.001458408 3.092350 6 1.179432 1.310031 0.0027349395 -0.13919465 0.006825793 2.288895 8 1.178978 1.309475 0.0013625009 0.82740214 0.003825979 3.082172 9 1.179033 1.309536 -0.0019105357 0.59343410 0.005449334 13.918518 11 1.178106 1.308788 -0.0027400671 18.59572021 0.002996743 22.617637 12 1.178366 1.309063 -0.0006052118 0.37929747 0.003088131 7.820289 13 1.178451 1.309323 0.0049551670 0.03454322 0.012487044 11.538654 14 1.178650 1.309558 -0.0019352422 1.61659950 0.001370019 3.649666 16 1.177989 1.308937 -0.0027612567 -0.27594529 0.008221470 1.619583 17 1.177907 1.308871 -0.0035109614 -0.77928794 0.010046488 4.513436 19 1.174558 1.305194 -0.0016757641 1.47739372 0.004608410 5.526405 20 1.174181 1.304796 -0.0015005710 -2.16716274 0.003664076 3.360225 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 405.613 co2l1 = 0.948 co2l0 = 0.007" [1] "co2l0 = -140.9 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "29 out of 165 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "136 out of 1134 1-min values rejected as stack air" [1] "136 out of 1134 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"