[1] "2025-04-29 23:17:46 MDT" [1] "1502" "150305" "d064" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150305a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:17:49 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.847, ave o2scale2 = 0.762" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "37 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.847, ave o2scale2 = 0.762" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "37 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:17:50 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:17:50 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:18:11 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:18:12 MDT" [1] "reading in recalculated plot titles" [1] "Removed 37 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1399 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:18:19 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.8" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.95 co2off = 400.34 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.82 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [5,] 12 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 161 170 0.1133836 0.1196463 0.1172120 3 -30.504734 265.9662 3 4 171 180 0.1203417 0.1266016 0.1241673 3 -1.387188 121.9253 4 3 181 190 0.1272970 0.1335567 0.1325134 3 -12.905570 215.5229 7 4 461 470 0.3220661 0.3283260 0.3258918 2 -1.365305 122.5227 8 2 471 480 0.3290214 0.3352860 0.3328513 2 -30.459328 267.9050 9 5 481 490 0.3359815 0.3422408 0.3411975 NA -12.208719 178.5781 12 2 761 770 0.5307500 0.5370127 0.5345772 3 -30.484641 272.5860 13 4 771 780 0.5377082 0.5439676 0.5415332 3 -1.390922 120.7709 14 3 781 790 0.5446631 0.5509225 0.5498791 3 -12.914031 219.8499 17 4 1041 1049 0.7394512 0.7457211 0.7434316 2 -1.393236 115.6400 18 2 1050 1054 0.7485034 0.7526769 0.7515173 2 -30.482917 269.8227 20 2 1325 1334 0.9481604 0.9544231 0.9519890 3 -30.501180 264.3925 21 4 1335 1344 0.9551185 0.9613817 0.9589474 3 -1.411125 123.2416 22 5 1345 1354 0.9620773 0.9683367 0.9672934 NA -12.254531 181.7523 23 3 1355 1364 0.9690321 0.9752913 0.9742481 3 -12.919750 208.4989 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.180062 1.310860 0.0006769550 -0.334352490 0.004756193 2.030693 3 1.180027 1.310821 0.0017353252 0.227408385 0.004809194 2.021789 4 1.180206 1.311014 0.0026749693 3.753893288 0.007880556 5.012596 7 1.181584 1.312522 0.0008997270 0.445036917 0.007849124 4.030748 8 1.181693 1.312639 -0.0029811822 -0.506021838 0.008621230 1.730056 9 1.181655 1.312547 -0.0040564154 -1.938765056 0.002872621 2.555149 12 1.181471 1.312292 0.0008920015 1.839027790 0.003768222 5.934421 13 1.181220 1.312003 0.0008705434 -0.008377008 0.006766906 4.908346 14 1.181059 1.311802 0.0018600507 1.422401853 0.006927478 1.974144 17 1.181281 1.312137 0.0013741460 -0.691203468 0.004052955 4.384462 18 1.181855 1.312849 0.0005375253 2.183625312 0.001154701 4.690818 20 1.181144 1.311912 -0.0008996931 -0.383459661 0.002728086 1.323510 21 1.181006 1.311773 0.0037012379 0.838602159 0.009464159 2.196400 22 1.181017 1.311783 -0.0026833631 2.566011257 0.001900349 3.327944 23 1.181045 1.311820 0.0019597690 0.629965072 0.004997991 1.078613 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 405.557 co2l1 = 0.949 co2l0 = 0.006" [1] "co2l0 = -139.92 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "47 out of 210 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "163 out of 1192 1-min values rejected as stack air" [1] "118 out of 714 Line 1 1-min values rejected as stack air" [1] "45 out of 478 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"