[1] "2025-04-29 23:17:07 MDT" [1] "1502" "150304" "d063" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150304a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:17:11 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.85, ave o2scale2 = 0.765" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "11 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.85, ave o2scale2 = 0.765" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "11 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:17:12 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:17:12 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:17:32 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:17:33 MDT" [1] "reading in recalculated plot titles" [1] "Removed 11 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1425 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:17:40 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.8" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.949 co2off = 405.62 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.8 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 100 109 0.06985333 0.07611690 0.07368196 2 -1.375563 123.6544 3 2 110 119 0.07681250 0.08307185 0.08063749 2 -30.486734 268.5389 4 5 120 129 0.08376736 0.09003047 0.08898516 NA -12.227187 178.8224 6 2 399 408 0.27855179 0.28481100 0.28237675 3 -30.554430 264.6057 7 4 409 418 0.28550645 0.29176600 0.28933175 3 -1.443313 119.6289 8 3 419 428 0.29246531 0.29872813 0.29768304 3 -12.960398 223.2225 10 4 695 704 0.48726091 0.49351985 0.49108589 2 -1.427242 122.5622 11 2 705 714 0.49421603 0.50047486 0.49804088 2 -30.556641 266.2844 13 2 995 1004 0.69595605 0.70221528 0.69978132 3 -30.542578 267.8292 14 4 1005 1014 0.70291091 0.70917361 0.70673910 3 -1.417992 124.1946 16 3 1022 1031 0.71682407 0.72308377 0.72204076 3 -12.931055 212.3038 18 4 1289 1298 0.90468921 0.91094907 0.90851468 2 -1.418516 119.4909 19 2 1299 1308 0.91164456 0.91790396 0.91546976 2 -30.515102 268.7482 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.175802 1.306320 0.0002263541 -1.1498485 0.003309045 7.220565 3 1.175950 1.306454 -0.0010474217 1.7201548 0.005000865 4.549682 4 1.175758 1.306275 -0.0053611504 -1.5695379 0.003800699 2.315383 6 1.174948 1.305300 -0.0005608751 -0.6733783 0.003718684 3.710356 7 1.174721 1.305043 0.0037636896 -0.2646630 0.009598758 4.150389 8 1.174871 1.305229 0.0031981818 -0.5401446 0.008408245 1.593881 10 1.174630 1.304887 0.0010632194 0.4238310 0.003740679 2.165722 11 1.174722 1.304961 -0.0022571769 0.3943485 0.008369584 3.971199 13 1.176455 1.306911 0.0003491978 -1.9023822 0.001512873 5.074132 14 1.176498 1.306962 0.0027381999 -0.1840847 0.009613481 5.518805 16 1.176574 1.307035 0.0038961493 0.7570487 0.010388300 1.466191 18 1.178143 1.308725 0.0005125539 -0.7721307 0.002676733 4.736748 19 1.178310 1.308959 -0.0017183046 1.1808313 0.006016155 5.611947 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 405.581 co2l1 = 0.948 co2l0 = 0.011" [1] "co2l0 = -140.45 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "9 out of 201 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "192 out of 1236 1-min values rejected as stack air" [1] "192 out of 1236 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"