[1] "2025-04-29 23:16:51 MDT" [1] "1502" "150303" "d062" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150303a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 48660 63 [1] 48660 [1] 48660 [1] "testing skipping spike filter" [1] 48660 [1] 48660 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:16:53 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.852, ave o2scale2 = 0.766" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with SP SD > 1000" [1] "86 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.852, ave o2scale2 = 0.766" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "86 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:16:54 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:16:54 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:17:00 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:17:01 MDT" [1] "reading in recalculated plot titles" [1] "Removed 86 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 1 row(s) with variable TFCELL" [1] "TEMP: 723 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:17:03 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.8" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.949 co2off = 400.2 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.3 minutes" [1] "Shortest Cal: 0 minutes" [1] "Longest Cal: 9.01 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 4 4 241 250 0.6523426 0.6586020 0.6561676 2 -1.383781 118.8608 1.174017 5 2 251 260 0.6592975 0.6655568 0.6631225 2 -30.514391 269.7289 1.174226 7 2 524 533 0.8611564 0.8674166 0.8649823 3 -30.538789 265.1577 1.174959 8 4 534 543 0.8681121 0.8743716 0.8719376 3 -1.409125 118.2333 1.174844 9 3 544 553 0.8750671 0.8813274 0.8802841 3 -12.941055 211.8613 1.174895 jfcv2 co2slp o2slp co2sd o2sd 4 1.304690 -0.001583927 -0.2365529 0.004035695 2.868350 5 1.304899 -0.001264573 1.5842616 0.004528155 6.840900 7 1.305559 0.001566888 -0.8551227 0.004421682 4.614179 8 1.305418 0.001334456 -0.2474100 0.006768576 1.725750 9 1.305470 0.002417703 1.2489229 0.008019399 4.674428 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 405.563 co2l1 = 0.948 co2l0 = 0.004" [1] "co2l0 = -139.12 co2l1 = 0.214" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "50 out of 115 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "65 out of 633 1-min values rejected as stack air" [1] "65 out of 633 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"