[1] "2025-04-29 23:15:55 MDT" [1] "1502" "150228" "d059" Read 2 records [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150228a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85458 63 [1] 85458 [1] 85458 [1] "testing skipping spike filter" [1] 85458 [1] 85458 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:15:59 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.854, ave o2scale2 = 0.769" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 2 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "101 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.854, ave o2scale2 = 0.769" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 3 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "99 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:15:59 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:15:59 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:16:12 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:16:14 MDT" [1] "reading in recalculated plot titles" [1] "Removed 99 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 54 manually filtered row(s) from a calbreak period" [1] "Removed 2 row(s) with variable TFCELL" [1] "TEMP: 1268 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:16:17 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.8" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 1.344 co2off = 405.39 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.33 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Removed 1 anomalous calibration row(s)" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 8 [4,] 9 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 119 123 0.1129881 0.1164653 0.1155379 2 18.445787 129.4692 3 2 124 133 0.1199468 0.1262095 0.1237732 2 -11.199297 277.3290 6 2 396 405 0.3215000 0.3277600 0.3253255 3 -11.200703 274.3896 7 4 406 415 0.3284554 0.3347152 0.3322805 3 18.472039 135.9673 8 3 416 425 0.3354108 0.3416736 0.3406285 3 6.720492 215.8182 10 3 541 546 0.4389879 0.4438600 0.4442078 3 6.734937 265.1463 11 2 547 556 0.4445556 0.4508187 0.4483819 3 -11.195289 282.2201 12 4 557 562 0.4515145 0.4554497 0.4544066 3 18.474016 122.9023 15 4 767 776 0.6461117 0.6523715 0.6499371 2 -1.161180 117.2128 16 2 777 786 0.6530671 0.6593299 0.6568943 2 -30.289391 258.6210 18 2 1062 1071 0.8548648 0.8611285 0.8586923 2 -30.307000 264.4847 19 4 1072 1081 0.8618240 0.8680868 0.8656519 2 -1.195461 118.6820 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.168832 1.300026 0.0017490700 -3.00293605 0.002853089 4.862019 3 1.168960 1.300251 -0.0002046144 2.01161984 0.003690110 5.284257 6 1.170280 1.302029 -0.0013357305 2.98245568 0.003764666 7.742283 7 1.170277 1.302015 0.0040003547 -0.86895692 0.010156144 2.711623 8 1.170216 1.301971 0.0038447696 -3.00503907 0.009678910 4.013088 10 1.169871 1.300340 0.0021055631 16.36746546 0.002762755 11.591871 11 1.170092 1.300612 0.0010218572 -1.10657424 0.006393176 3.540233 12 1.170262 1.300819 0.0029396012 -1.33860289 0.004969536 12.536821 15 1.170402 1.300655 0.0007629604 -1.20113389 0.002962270 3.333161 16 1.170556 1.300771 -0.0011701832 -0.16743985 0.007513734 4.949234 18 1.171650 1.301938 -0.0023748868 0.05854134 0.005931905 4.702488 19 1.171601 1.301877 0.0026128801 -0.84475498 0.006745777 5.993202 [1] "Broke calibration interpolation before 0.604166666666667 and after 0.645833333333333" [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 394.905 co2l1 = 0.941 co2l0 = -0.007" [1] "co2l0 = -139.81 co2l1 = 0.21" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "36 out of 211 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "175 out of 1066 1-min values rejected as stack air" [1] "175 out of 1066 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"