[1] "2025-04-29 23:15:20 MDT" [1] "1502" "150227" "d058" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150227a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:15:24 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.85, ave o2scale2 = 0.765" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "271 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.85, ave o2scale2 = 0.765" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "270 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:15:24 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:15:24 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:15:45 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:15:47 MDT" [1] "reading in recalculated plot titles" [1] "Removed 270 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1164 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:15:50 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.8" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.931 co2off = 395.53 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.02 minutes" [1] "Shortest Cal: 3.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 100 109 0.07036192 0.07662083 0.07418683 3 -10.933805 279.4737 3 4 110 119 0.07731617 0.08357957 0.08114541 3 18.721953 134.6193 4 3 120 129 0.08427491 0.09053764 0.08949456 3 6.999250 226.9106 7 4 398 407 0.27909499 0.28535547 0.28292072 2 18.684695 141.7497 8 2 408 417 0.28605408 0.29231696 0.28987989 2 -10.970523 277.9631 12 2 690 697 0.48675492 0.49231933 0.49046431 3 -11.081142 279.7206 13 4 698 706 0.49301994 0.49858588 0.49649666 3 18.586134 136.1772 15 3 716 724 0.50554230 0.51111105 0.51041291 3 6.839375 219.8405 17 4 960 968 0.69550177 0.70176505 0.69917945 2 18.447074 131.5786 18 2 969 975 0.70246062 0.70663681 0.70524447 2 -11.232788 280.0629 20 2 1098 1104 0.90425243 0.91051172 0.90814733 2 -11.256233 277.8799 21 3 1105 1108 0.92094991 0.92303779 0.92564662 2 6.696844 220.0179 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.189904 1.322293 -0.0041820574 -0.3070600 0.0102765031 3.621237 3 1.189615 1.321970 0.0025927958 -0.2918797 0.0077341247 4.221933 4 1.189374 1.321688 0.0032436486 3.1513008 0.0088207598 4.424871 7 1.185908 1.317760 0.0005237191 0.1688295 0.0020404496 2.611859 8 1.186145 1.318056 -0.0021549485 -0.2417508 0.0061675759 2.337774 12 1.176762 1.307425 -0.0002329760 2.8539837 0.0012647852 9.562528 13 1.176289 1.307069 0.0062188445 -0.8463687 0.0146133959 3.464029 15 1.175232 1.306036 0.0050030946 -4.2297983 0.0112475692 5.298137 17 1.166262 1.295641 0.0004919226 0.5498350 0.0024087696 5.217672 18 1.166190 1.295459 0.0016195417 -2.2941361 0.0060741833 10.440952 20 1.164570 1.292743 -0.0004858192 -2.9265492 0.0017487067 8.946731 21 1.164742 1.293175 0.0003120709 2.0564030 0.0002209709 18.941357 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 386.95 co2l1 = 0.93 co2l0 = -0.011" [1] "co2l0 = -142.58 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "74 out of 230 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "156 out of 1004 1-min values rejected as stack air" [1] "134 out of 711 Line 1 1-min values rejected as stack air" [1] "22 out of 293 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"