[1] "2025-04-29 23:14:46 MDT" [1] "1502" "150226" "d057" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150226a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:14:50 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.846, ave o2scale2 = 0.761" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with SP SD > 1000" [1] "28 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.846, ave o2scale2 = 0.761" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "28 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:14:51 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:14:51 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:15:07 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:15:09 MDT" [1] "reading in recalculated plot titles" [1] "Removed 28 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 3 row(s) with low FLSP" [1] "TEMP: 1403 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:15:14 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.8" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.931 co2off = 391.92 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.95 minutes" [1] "Shortest Cal: 8.05 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 38 46 0.02770885 0.03329786 0.03120045 2 18.584062 134.1552 3 2 47 56 0.03399311 0.04025590 0.03781967 2 -11.089391 276.6581 5 2 336 345 0.23578935 0.24205214 0.23961800 3 -11.009305 280.5036 6 4 346 355 0.24274769 0.24901429 0.24657711 3 18.667430 130.7048 7 5 356 365 0.24970958 0.25597263 0.25492825 NA 7.604500 194.7056 8 3 366 375 0.25666794 0.26293076 0.26188759 3 6.930625 226.8406 10 4 631 640 0.44458932 0.45085281 0.44841739 2 18.720516 132.3185 11 2 641 650 0.45154795 0.45781100 0.45537668 2 -10.937258 278.6295 13 2 913 922 0.65311525 0.65937500 0.65694052 3 -10.956102 284.1053 14 4 923 931 0.66007060 0.66633333 0.66424610 3 18.716121 132.4044 15 3 932 941 0.66702896 0.67329167 0.67224850 3 6.983500 222.2591 17 4 1208 1217 0.86163087 0.86789103 0.86545676 2 18.731695 129.6011 18 2 1218 1227 0.86858854 0.87485301 0.87241587 2 -10.924414 283.6161 19 5 1228 1237 0.87554864 0.88181134 0.88076719 NA 7.743188 197.4676 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.170422 1.300788 0.0002669512 1.42006103 0.005199659 7.385348 3 1.170620 1.301030 -0.0001766673 -1.05672656 0.002797230 6.451659 5 1.176724 1.307822 -0.0005474576 -1.37361122 0.001977112 4.043435 6 1.176861 1.307958 0.0043383661 1.07251017 0.011466296 5.737936 7 1.177187 1.308316 -0.0027463382 -1.03223188 0.001944544 3.754937 8 1.177497 1.308657 0.0043070824 0.85471217 0.010929666 3.464382 10 1.183371 1.315328 -0.0003689850 -0.50853700 0.003917787 5.148193 11 1.183409 1.315375 -0.0018297882 1.79309736 0.006386495 5.201607 13 1.186174 1.318540 -0.0005578633 -0.53196885 0.002120251 13.603912 14 1.186240 1.318527 0.0009742918 -0.63033528 0.003951000 3.116843 15 1.186439 1.318743 0.0037502369 -4.55350831 0.009332403 5.973738 17 1.189485 1.321907 0.0021224547 -1.44661106 0.007696564 6.249955 18 1.189716 1.322139 -0.0029454704 -0.09827122 0.009192627 2.567625 19 1.189761 1.322188 0.0003744383 2.08359879 0.000265165 3.727115 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 386.849 co2l1 = 0.931 co2l0 = -0.011" [1] "co2l0 = -141.95 co2l1 = 0.214" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "15 out of 100 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "85 out of 1211 1-min values rejected as stack air" [1] "83 out of 1133 Line 1 1-min values rejected as stack air" [1] "2 out of 78 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"