[1] "2025-04-29 23:14:15 MDT" [1] "1502" "150225" "d056" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150225a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:14:19 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.852, ave o2scale2 = 0.766" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 11 MR FC 2 jog(s) with SP SD > 1000" [1] "26 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.852, ave o2scale2 = 0.766" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 11 RC FC 2 jog(s) with SP SD > 1000" [1] "26 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:14:19 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:14:19 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:14:36 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:14:38 MDT" [1] "reading in recalculated plot titles" [1] "Removed 26 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1410 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:14:41 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.8" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.93 co2off = 400.55 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.01 minutes" [1] "Average Cal: 7.4 minutes" [1] "Shortest Cal: 4.04 minutes" [1] "Longest Cal: 8.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 3 [3,] 4 6 [4,] 7 8 [5,] 10 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 3 6 13 0.004732639 0.009604225 0.009256525 1 7.043104 205.1906 4 4 271 279 0.192620370 0.198187876 0.196101488 2 18.777732 132.3094 5 2 280 288 0.199578704 0.205145862 0.203059148 2 -10.919437 275.6196 7 2 567 575 0.401407986 0.406972830 0.404886434 3 -11.019366 268.7949 8 4 576 583 0.409063050 0.413931481 0.412192704 3 18.652042 144.1935 9 3 584 591 0.415322425 0.420190972 0.419843171 3 6.847354 212.8284 11 4 860 868 0.610134259 0.615697975 0.613611830 2 18.605670 133.7737 12 2 869 877 0.617089149 0.622653675 0.620567076 2 -11.072714 277.9662 13 5 878 885 0.624739757 0.629612066 0.629264352 NA 8.269625 209.4816 15 2 1154 1162 0.818884433 0.824452546 0.822365435 3 -11.083259 277.2637 16 4 1163 1171 0.825843547 0.831410909 0.829323830 3 18.597009 130.5410 17 3 1172 1180 0.832802083 0.838369473 0.837674064 3 6.828232 212.6398 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.185719 1.318070 0.0132645441 1.6806931 0.025023135 1.190064 4 1.182266 1.314184 -0.0006686787 1.6643518 0.003446714 6.604660 5 1.181990 1.313863 -0.0008157131 2.0896785 0.003285265 8.473142 7 1.173537 1.304219 -0.0029553962 4.9026879 0.007510793 19.608326 8 1.172992 1.303621 0.0004385935 6.2821583 0.001056724 20.712936 9 1.172833 1.303423 0.0131037581 2.3301692 0.024744307 1.650425 11 1.169487 1.299280 0.0026348435 2.4813942 0.006937567 8.149365 12 1.169550 1.299309 0.0008223265 1.7027996 0.002778933 7.210281 13 1.169001 1.299315 0.2209553928 15.6527888 0.156447375 11.083873 15 1.169436 1.299412 -0.0015749518 0.5613866 0.004563417 3.398957 16 1.169286 1.299353 0.0026135216 2.0328132 0.006509251 8.632224 17 1.169408 1.299421 0.0139332762 6.9108210 0.030316059 7.400683 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 386.862 co2l1 = 0.93 co2l0 = 0.022" [1] "co2l0 = -143.4 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "164 out of 315 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "151 out of 1246 1-min values rejected as stack air" [1] "151 out of 1246 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"