[1] "2025-04-29 23:13:44 MDT" [1] "1502" "150224" "d055" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150224a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85980 63 [1] 85980 [1] 85980 [1] "testing skipping spike filter" [1] 85980 [1] 85980 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:13:48 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.847, ave o2scale2 = 0.762" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 2 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 3 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 9 MR FC 2 jog(s) with SP SD > 1000" [1] "55 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.847, ave o2scale2 = 0.762" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 3 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 9 RC FC 2 jog(s) with SP SD > 1000" [1] "57 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:13:48 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:13:48 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:14:05 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:14:07 MDT" [1] "reading in recalculated plot titles" [1] "Removed 57 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1375 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:14:10 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.8" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.932 co2off = 373.94 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.05 minutes" [1] "Average Cal: 7.96 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.01 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 212 220 0.1488130 0.1543765 0.1522903 3 -11.837411 277.2945 3 4 221 229 0.1557674 0.1613319 0.1592455 3 17.822500 135.9755 4 3 230 237 0.1627267 0.1675949 0.1672471 3 6.037323 194.7152 6 4 495 503 0.3575483 0.3631122 0.3610256 2 17.867518 134.1001 7 2 504 512 0.3645035 0.3700673 0.3679811 2 -11.798714 276.2955 8 5 513 522 0.3707627 0.3770227 0.3759795 NA 7.451625 218.5341 10 2 785 793 0.5663004 0.5718935 0.5697960 3 -11.781589 277.4314 11 4 794 802 0.5732923 0.5788877 0.5767893 3 17.870938 135.1532 12 3 803 811 0.5802862 0.5858851 0.5851860 3 6.091920 201.0769 16 4 1068 1076 0.7753671 0.7809584 0.7788614 2 17.878420 131.8527 17 2 1077 1084 0.7823565 0.7872519 0.7855032 2 -11.754531 272.9910 19 2 1358 1366 0.9837842 0.9893762 0.9872791 2 -11.757170 278.5857 20 4 1367 1375 0.9907744 0.9963657 0.9942684 2 17.876670 127.9472 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.175390 1.308505 -7.198445e-04 0.2120615 0.003529610 4.593683 3 1.175463 1.308572 2.070459e-03 1.9406452 0.005994355 4.393154 4 1.175685 1.308860 1.439763e-02 1.9241435 0.027288402 1.362843 6 1.179528 1.312953 -5.572959e-05 0.8670368 0.001689703 5.729829 7 1.179655 1.313093 -4.368780e-04 2.0531704 0.001476754 5.775270 8 1.179463 1.312995 -3.545125e-02 6.7572766 0.025102291 13.049733 10 1.181304 1.312715 -1.673636e-03 2.7464900 0.004160494 7.252920 11 1.181434 1.312824 7.952866e-04 -0.5738659 0.004352621 3.314940 12 1.181593 1.313072 1.396771e-02 14.7691994 0.030462659 14.880362 16 1.184238 1.316119 2.860732e-04 4.0372404 0.002109846 9.693707 17 1.184314 1.316206 2.108066e-04 0.6309509 0.004334230 4.764202 19 1.186477 1.318568 -3.811722e-03 0.8310592 0.008723003 4.080118 20 1.186376 1.318486 2.789507e-03 0.5646226 0.007082265 6.924931 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 387.61 co2l1 = 0.931 co2l0 = 0.022" [1] "co2l0 = -142.15 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "30 out of 228 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "198 out of 1208 1-min values rejected as stack air" [1] "156 out of 1095 Line 1 1-min values rejected as stack air" [1] "42 out of 113 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"