[1] "2025-04-29 23:13:15 MDT" [1] "1502" "150223" "d054" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150223a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85800 63 [1] 85800 [1] 85800 [1] "testing skipping spike filter" [1] 85800 [1] 85800 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:13:19 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.853, ave o2scale2 = 0.767" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 7 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with SP SD > 1000" [1] "51 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.853, ave o2scale2 = 0.767" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 7 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "51 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:13:20 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:13:20 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:13:35 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:13:36 MDT" [1] "reading in recalculated plot titles" [1] "Removed 51 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1378 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:13:39 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.8" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.933 co2off = 389.35 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.08 minutes" [1] "Average Cal: 8.12 minutes" [1] "Shortest Cal: 7.06 minutes" [1] "Longest Cal: 9.09 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 144 152 0.1053280 0.1108917 0.1088054 2 15.449134 132.4370 3 2 153 162 0.1115871 0.1178531 0.1154164 2 -14.163602 274.7700 8 2 441 449 0.3141029 0.3196743 0.3175879 3 -14.190830 277.8762 9 4 450 459 0.3203698 0.3266296 0.3241952 3 15.403625 126.4754 10 3 460 469 0.3273251 0.3335885 0.3325448 3 3.645086 204.1663 12 4 731 739 0.5226647 0.5282787 0.5261750 2 15.404759 127.7049 13 2 740 749 0.5289838 0.5352983 0.5328437 2 -14.201797 276.7018 15 2 1011 1019 0.7311528 0.7367681 0.7346627 3 -13.339759 272.6900 16 4 1020 1028 0.7381722 0.7437824 0.7416777 3 16.280071 131.7365 18 3 1036 1043 0.7522016 0.7571075 0.7567571 3 5.674667 209.0169 20 4 1299 1307 0.9402280 0.9458356 0.9437325 2 17.785027 128.3878 21 2 1308 1315 0.9472384 0.9521488 0.9503939 2 -11.898344 284.5636 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.174190 1.303954 0.0003031992 3.5982356 0.004309846 9.093307 3 1.174116 1.303859 0.0003333988 4.9179003 0.002564554 12.307604 8 1.172893 1.302792 -0.0044753267 3.6184975 0.010224926 9.113482 9 1.172818 1.302680 0.0043682772 1.9407563 0.013797887 7.825529 10 1.172859 1.302718 0.0148898653 5.1504537 0.038263010 7.061630 12 1.172234 1.302248 0.0018415060 3.6987495 0.006344538 9.819562 13 1.172459 1.302542 -0.0010165591 5.8381750 0.005603904 17.172208 15 1.173054 1.304905 -0.0023283201 1.9411101 0.006095745 6.697333 16 1.172925 1.304722 0.0020375006 2.9948428 0.005369599 7.411843 18 1.171628 1.304048 0.0174722008 10.7423502 0.033131029 7.666885 20 1.172528 1.304712 0.0007869106 0.1907866 0.003351938 5.929529 21 1.172636 1.304771 -0.0026321935 4.1401446 0.007953748 8.761172 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 389.203 co2l1 = 0.931 co2l0 = -0.35" [1] "co2l0 = -141.24 co2l1 = 0.216" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "63 out of 280 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "217 out of 1196 1-min values rejected as stack air" [1] "157 out of 1078 Line 1 1-min values rejected as stack air" [1] "60 out of 118 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"