[1] "2025-04-29 23:12:56 MDT" [1] "1502" "150222" "d053" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150222a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 68113 63 [1] 68113 [1] 68113 [1] "testing skipping spike filter" [1] 68113 [1] 68113 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:12:59 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.853, ave o2scale2 = 0.768" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 5 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 2 MR FC 2 jog(s) with SP SD > 1000" [1] "64 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.853, ave o2scale2 = 0.768" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 6 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 2 RC FC 2 jog(s) with SP SD > 1000" [1] "66 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:12:59 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:12:59 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:13:06 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:13:08 MDT" [1] "reading in recalculated plot titles" [1] "Removed 66 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 9 row(s) with variable TFCELL" [1] "TEMP: 1059 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:13:10 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.8" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.999 co2off = 377.15 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.02 minutes" [1] "Average Cal: 7.77 minutes" [1] "Shortest Cal: 3 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 31 39 0.02357758 0.02915608 0.02706351 2 13.358875 127.9040 3 2 40 49 0.02985156 0.03611458 0.03367890 2 -16.149687 279.0037 6 2 326 329 0.23232292 0.23440929 0.23406165 3 -16.081063 267.3350 7 4 330 338 0.23928096 0.24484488 0.24275838 3 13.441116 152.2307 8 3 339 347 0.24554034 0.25110764 0.25041204 3 1.713446 190.0810 12 4 625 633 0.68785770 0.69342161 0.69133535 2 15.594625 133.9243 13 2 634 643 0.69411693 0.70037708 0.69794260 2 -14.027711 277.5407 15 2 913 921 0.89658944 0.90215723 0.90006930 3 -14.091964 276.1150 16 4 922 931 0.90285255 0.90911227 0.90667776 3 15.506797 118.7191 17 3 932 941 0.90980787 0.91607060 0.91502739 3 3.752008 198.8024 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.165338 1.295681 -0.0006417419 3.756872 0.004524816 9.045879 3 1.165615 1.296007 0.0001553480 1.092126 0.008070352 8.691564 6 1.170048 1.301386 0.0038703234 11.758214 0.002740039 8.324359 7 1.170201 1.301554 0.0032028080 -5.718430 0.009394246 17.446883 8 1.170471 1.301760 0.0127556891 11.783955 0.029100455 12.003273 12 1.175516 1.305313 0.0023917869 3.892905 0.007458304 10.391154 13 1.175632 1.305444 -0.0008074666 3.069015 0.002258895 8.867904 15 1.174739 1.304622 -0.0006276211 3.831002 0.004083257 8.659689 16 1.174615 1.304417 0.0039309338 1.793006 0.014685572 8.687835 17 1.174533 1.304343 0.0125543050 10.894588 0.031586588 14.175820 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 390.728 co2l1 = 0.934 co2l0 = 0.033" [1] "co2l0 = -142.33 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "21 out of 72 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "51 out of 887 1-min values rejected as stack air" [1] "51 out of 887 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"