[1] "2025-04-29 23:12:30 MDT" [1] "1502" "150221" "d052" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150221a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85310 63 [1] 85310 [1] 85310 [1] "testing skipping spike filter" [1] 85310 [1] 85310 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:12:34 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.856, ave o2scale2 = 0.77" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 2 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "33 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.856, ave o2scale2 = 0.77" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 3 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "33 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:12:35 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:12:35 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:12:44 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:12:46 MDT" [1] "reading in recalculated plot titles" [1] "Removed 33 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 2 row(s) with variable TFCELL" [1] "TEMP: 1384 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:12:51 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.8" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.936 co2off = 386.58 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.35 minutes" [1] "Shortest Cal: 3.02 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Removed 1 anomalous calibration row(s)" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 9 [4,] 10 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 126 135 0.09046638 0.09672917 0.09429504 2 13.730398 131.2640 3 2 136 144 0.09742474 0.10299190 0.10090358 2 -15.796857 274.8885 5 2 425 434 0.29921065 0.30547740 0.30304319 3 -15.940844 281.8387 6 4 435 444 0.30617251 0.31243226 0.30999816 3 13.560531 137.6119 7 5 445 454 0.31312778 0.31939057 0.31834752 NA 2.673438 191.7754 8 3 455 464 0.32008944 0.32635278 0.32530680 3 1.877570 236.7608 10 3 535 538 0.40078683 0.40288079 0.40392398 3 1.864687 258.3397 11 2 539 548 0.40357633 0.40983912 0.40740322 3 -15.986922 289.9980 12 4 549 558 0.41053472 0.41679748 0.41436290 3 13.508664 123.3924 15 4 820 828 0.60607321 0.61164100 0.60955397 2 13.450357 131.6279 16 2 829 838 0.61233637 0.61859954 0.61616514 2 -16.074156 279.7129 18 2 1119 1127 0.81482717 0.82039123 0.81830483 2 -16.138911 276.2627 19 4 1128 1137 0.82108681 0.82734635 0.82491204 2 13.370031 128.0321 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.179146 1.310742 -0.0011910221 0.07161301 0.003908116 3.992802 3 1.178588 1.310385 -0.0046924195 6.49546270 0.011870433 18.107577 5 1.171204 1.301391 -0.0024710317 0.63777025 0.006218582 3.877160 6 1.170722 1.300886 0.0006598893 0.53203227 0.006257139 4.949496 7 1.170409 1.300514 0.0056179775 -0.43438445 0.003977476 3.489732 8 1.170173 1.300214 0.0033330866 9.30045267 0.008319072 12.107174 10 1.166646 1.296880 -0.0026206323 15.59847976 0.001856155 20.776251 11 1.166747 1.297073 -0.0032895153 -0.08107520 0.008205287 4.877093 12 1.166749 1.297107 0.0031473108 -3.15808887 0.010844268 12.279475 15 1.165595 1.296254 -0.0002142184 0.94222276 0.007146506 3.732163 16 1.165596 1.296248 0.0010385530 3.04171869 0.003254976 11.693533 18 1.163650 1.294071 -0.0007958197 2.28876983 0.003605525 7.529232 19 1.163483 1.293848 0.0062191413 1.36968998 0.018417195 6.478903 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 391.585 co2l1 = 0.936 co2l0 = -0.017" [1] "co2l0 = -141.33 co2l1 = 0.21" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "25 out of 60 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "35 out of 1192 1-min values rejected as stack air" [1] "35 out of 1192 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"