[1] "2025-04-29 23:11:54 MDT" [1] "1502" "150220" "d051" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150220a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:11:58 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.844, ave o2scale2 = 0.759" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "13 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.844, ave o2scale2 = 0.759" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "14 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:11:58 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:11:58 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:12:18 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:12:20 MDT" [1] "reading in recalculated plot titles" [1] "Removed 15 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1421 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:12:25 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.8" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.937 co2off = 391.18 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.95 minutes" [1] "Shortest Cal: 8.02 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [5,] 13 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 66 75 0.04663310 0.05289583 0.05045982 3 -15.390172 283.1063 3 4 76 85 0.05359144 0.05985417 0.05741776 3 14.101758 136.0249 4 5 86 95 0.06054980 0.06681305 0.06576993 NA 3.200125 193.2649 5 3 96 105 0.06750830 0.07377135 0.07272826 3 2.400297 220.3324 7 4 363 372 0.25540972 0.26167234 0.25923845 2 13.969219 133.3412 8 2 373 382 0.26236777 0.26863082 0.26619667 2 -15.535211 280.4404 10 2 661 670 0.46421889 0.47047839 0.46804440 3 -15.626352 281.3166 11 4 671 680 0.47117373 0.47743374 0.47499930 3 13.879063 131.4806 12 3 681 690 0.47812908 0.48438796 0.48334498 3 2.208906 225.1494 14 4 960 968 0.67300205 0.67926505 0.67707808 2 13.840658 133.9388 15 2 969 977 0.67996062 0.68552786 0.68343950 2 -15.652812 282.4425 16 5 978 987 0.68691901 0.69318244 0.69213846 NA 3.060656 196.3292 18 2 1254 1263 0.88173148 0.88799427 0.88555710 3 -15.669852 277.6501 19 4 1264 1273 0.88868981 0.89495145 0.89251528 3 13.813695 136.4981 20 3 1274 1283 0.89564878 0.90191204 0.90086785 3 2.149945 226.1621 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.190986 1.324223 -0.0023695006 0.03479389 0.0062606828 1.4057755 3 1.190801 1.324016 0.0018219315 0.50688824 0.0057550868 2.7491258 4 1.190617 1.323789 0.0004993134 3.01707014 0.0003535534 4.0227646 5 1.190435 1.323582 0.0030372884 1.44174630 0.0083509616 2.1840950 7 1.184887 1.317701 0.0006051611 -1.61449201 0.0060997109 4.6301516 8 1.184606 1.317385 -0.0042403381 0.04653819 0.0105716590 2.5735626 10 1.182386 1.314554 0.0006739332 0.29510247 0.0034471354 4.2777570 11 1.182432 1.314605 0.0017233852 1.20759812 0.0046875595 4.3129315 12 1.182644 1.314870 0.0034237021 0.23150734 0.0091748273 2.0388299 14 1.184555 1.317223 0.0002798830 0.50160139 0.0011335294 2.8799322 15 1.184799 1.317519 -0.0005736612 0.00751753 0.0043373379 0.8955777 16 1.185048 1.317763 0.0016852530 0.84483825 0.0011932427 1.1967591 18 1.185144 1.317907 -0.0029348557 -0.11716717 0.0074252929 4.0365185 19 1.184894 1.317602 0.0004933895 1.33983575 0.0056396078 4.7115422 20 1.185001 1.317697 0.0039012392 5.08864579 0.0099615016 6.7335616 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 391.209 co2l1 = 0.936 co2l0 = -0.006" [1] "co2l0 = -142.82 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "45 out of 175 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "130 out of 1216 1-min values rejected as stack air" [1] "130 out of 1216 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"