[1] "2025-04-29 23:11:18 MDT" [1] "1502" "150219" "d050" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150219a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:11:22 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.84, ave o2scale2 = 0.755" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "17 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.84, ave o2scale2 = 0.755" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "17 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:11:23 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:11:23 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:11:42 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:11:44 MDT" [1] "reading in recalculated plot titles" [1] "Removed 18 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 613 row(s) with low FLSP" [1] "TEMP: 805 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:11:49 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.8" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.937 co2off = 386.06 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 35.07 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 299.6 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 6 [4,] 7 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 4 1 9 0.003576736 0.009144387 0.007057879 2 14.282696 130.7569 2 2 10 27 0.009839815 0.217896991 0.126829997 2 -15.229113 277.9210 3 4 28 37 0.218592650 0.224852199 0.222418229 2 14.228609 135.7934 4 3 38 46 0.225547569 0.231115394 0.230419965 2 2.560027 229.5114 5 4 47 55 0.421081019 0.426644676 0.424558470 2 14.226286 132.6010 6 2 56 64 0.427340278 0.432908449 0.430821912 2 -15.254518 282.8510 8 2 275 284 0.629125174 0.635385417 0.632950948 3 -15.313305 282.8215 9 4 285 294 0.636081019 0.642343750 0.639908637 3 14.193117 134.9037 10 3 295 304 0.643039381 0.649298669 0.648255281 3 2.516992 223.2428 12 4 574 583 0.837892245 0.844155093 0.841721137 2 14.130086 134.8109 13 2 584 593 0.844850752 0.851113426 0.848679279 2 -15.354430 280.4018 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.189496 1.322135 0.0024247943 2.34342844 0.005296474 6.108650 2 1.190087 1.322818 -0.0002040846 0.00883306 0.031113094 5.789109 3 1.190467 1.323262 0.0039019774 -1.73833432 0.009847710 5.554769 4 1.190559 1.323470 0.0043898916 5.38302166 0.009741507 5.607309 5 1.191855 1.324854 0.0020351705 1.48984095 0.005144255 5.693039 6 1.191829 1.324948 -0.0046648392 0.64940530 0.010622776 2.533660 8 1.192521 1.325974 0.0002727208 1.60309549 0.003176265 4.682853 9 1.192433 1.325880 0.0021941443 1.10771037 0.006739777 4.494809 10 1.192466 1.325936 0.0032102181 0.65378539 0.010290287 2.549284 12 1.191865 1.325231 -0.0002919524 0.26320222 0.004136879 2.043480 13 1.191976 1.325352 -0.0023320389 1.29562090 0.006476730 4.541553 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 390.934 co2l1 = 0.936 co2l0 = -0.009" [1] "co2l0 = -142.73 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "18 out of 25 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "7 out of 671 1-min values rejected as stack air" [1] "7 out of 671 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"