[1] "2025-04-29 23:10:23 MDT" [1] "1502" "150217" "d048" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150217a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83454 63 [1] 83454 [1] 83454 [1] "testing skipping spike filter" [1] 83454 [1] 83454 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:10:27 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.844, ave o2scale2 = 0.759" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "38 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.844, ave o2scale2 = 0.759" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "39 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:10:27 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:10:27 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:10:35 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:10:36 MDT" [1] "reading in recalculated plot titles" [1] "Removed 39 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 299 row(s) with low FLSP" [1] "Removed 4 row(s) with variable TFCELL" [1] "TEMP: 1046 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:10:40 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.8" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.937 co2off = 385.58 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.85 minutes" [1] "Shortest Cal: 8.02 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 121 130 0.08446094 0.09072407 0.08828760 3 -14.761234 272.8911 3 4 131 140 0.09141933 0.09768229 0.09524667 3 14.725914 143.9416 4 5 141 150 0.09837786 0.10464045 0.10359754 NA 3.843500 189.4975 5 3 151 160 0.10533579 0.11159870 0.11055575 3 3.044734 231.7004 8 4 421 430 0.29320472 0.29946759 0.29703139 2 14.702297 132.4446 9 2 431 440 0.30016322 0.30642593 0.30399065 2 -14.792617 278.9812 12 2 719 728 0.50194008 0.50820017 0.50576561 3 -14.839656 279.8959 13 4 729 738 0.50889517 0.51515796 0.51272284 3 14.676320 125.7171 14 3 739 748 0.51585327 0.52211641 0.52107321 3 2.990953 224.1420 16 2 1019 1027 0.96082986 0.96639699 0.96431036 3 -15.031393 281.5296 17 4 1028 1037 0.96709259 0.97335535 0.97092096 3 14.476594 131.5665 18 3 1038 1046 0.97405098 0.97961866 0.97892331 3 2.801625 215.1583 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.186862 1.319248 -1.423079e-03 0.97189522 0.0057984902 26.731134 3 1.186746 1.319127 1.300646e-04 -6.28796321 0.0044450938 25.249399 4 1.186759 1.319097 -1.249115e-03 1.11164635 0.0008838835 2.380043 5 1.186827 1.319167 1.585579e-03 1.55407590 0.0067881486 6.791035 8 1.185292 1.317502 1.037558e-04 -0.05405085 0.0022526646 4.999168 9 1.185458 1.317672 -1.468631e-03 -0.33927567 0.0069624661 9.282572 12 1.186405 1.318721 -7.279998e-05 0.01014047 0.0030222390 5.511381 13 1.186354 1.318655 4.506689e-03 -1.41783970 0.0113848288 14.990624 14 1.186459 1.318796 3.274752e-03 1.93107363 0.0081745570 2.728797 16 1.185890 1.317950 2.839957e-03 2.08126229 0.0065016739 6.358536 17 1.185866 1.317922 2.575121e-03 1.08440654 0.0074739130 4.260509 18 1.185905 1.318144 3.169309e-03 -0.83771934 0.0076076476 0.880464 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 390.532 co2l1 = 0.936 co2l0 = -0.005" [1] "co2l0 = -143.1 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "35 out of 200 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "165 out of 897 1-min values rejected as stack air" [1] "163 out of 744 Line 1 1-min values rejected as stack air" [1] "2 out of 153 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"