[1] "2025-04-29 23:09:06 MDT" [1] "1502" "150215" "d046" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150215a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:09:10 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.835, ave o2scale2 = 0.751" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "16 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.835, ave o2scale2 = 0.751" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "16 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:09:10 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:09:10 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:09:32 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:09:33 MDT" [1] "reading in recalculated plot titles" [1] "Removed 16 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1419 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:09:39 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.8" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.938 co2off = 378.66 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.55 minutes" [1] "Shortest Cal: 2 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 6 8 [4,] 9 10 [5,] 11 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 4 13 0.003773148 0.01003588 0.00759898 2 15.765469 132.8656 3 3 14 21 0.010731481 0.01699421 0.01664646 2 4.174760 199.4817 6 4 288 297 0.205549884 0.21181270 0.20937859 2 15.784539 132.0669 7 2 298 307 0.212508623 0.21877321 0.21633736 2 -13.682141 275.8481 8 5 308 317 0.219470515 0.22573348 0.22468851 NA 4.889875 190.5150 11 2 587 596 0.414311372 0.42057477 0.41813818 3 -13.855227 282.5300 12 4 597 606 0.421270168 0.42753319 0.42509647 3 15.606070 135.6963 13 3 607 616 0.428228588 0.43449132 0.43344638 3 3.920063 223.9914 15 4 885 894 0.623116898 0.62938067 0.62694438 2 15.390672 133.9072 16 2 895 904 0.630076157 0.63633912 0.63390394 2 -14.090352 278.7321 19 2 1179 1188 0.831885937 0.83814580 0.83571144 3 -14.289422 283.5317 20 4 1189 1198 0.838841233 0.84510069 0.84266644 3 15.185305 139.5543 21 5 1199 1208 0.845804340 0.85206343 0.85102021 NA 4.288031 193.7133 22 3 1209 1218 0.852758912 0.85901892 0.85797527 3 3.502820 226.0913 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.200720 1.335133 0.0047137456 0.008796027 0.0121485412 3.4791667 3 1.201275 1.335688 -0.0109338364 -0.341970999 0.0286626776 0.2421828 6 1.202117 1.336104 0.0016882794 1.164591323 0.0055279260 10.0631194 7 1.202193 1.336156 -0.0043661157 0.665744744 0.0114400490 2.2657836 8 1.202197 1.336147 -0.0004993550 -1.095043439 0.0003535534 2.0423823 11 1.199190 1.333005 -0.0022433981 1.205753971 0.0057547474 4.3751314 12 1.199041 1.332831 -0.0005594653 0.028421947 0.0047594405 4.0272781 13 1.198960 1.332715 -0.0012474042 4.968819660 0.0041374272 6.5990570 15 1.195196 1.328726 -0.0014207399 0.763150689 0.0048223751 6.2064538 16 1.195169 1.328645 -0.0034701289 -0.264559710 0.0098193469 5.9311452 19 1.193026 1.325795 0.0011305943 2.071662160 0.0034225731 6.6920696 20 1.192766 1.325563 0.0004273737 0.597054755 0.0070206517 7.0812679 21 1.192853 1.325746 -0.0013108069 -1.038429592 0.0009280777 1.4370272 22 1.192899 1.325781 0.0020527134 -0.208991655 0.0053488189 0.4049169 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 389.655 co2l1 = 0.938 co2l0 = 0.003" [1] "co2l0 = -145.62 co2l1 = 0.238" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "35 out of 290 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "255 out of 1215 1-min values rejected as stack air" [1] "214 out of 538 Line 1 1-min values rejected as stack air" [1] "41 out of 677 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"