[1] "2025-04-29 23:08:51 MDT" [1] "1502" "150214" "d045" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150214a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 37031 63 [1] 37031 [1] 37031 [1] "testing skipping spike filter" [1] 37031 [1] 37031 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:08:53 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.834, ave o2scale2 = 0.748" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "41 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.834, ave o2scale2 = 0.748" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "41 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:08:53 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:08:53 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:08:59 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:09:00 MDT" [1] "reading in recalculated plot titles" [1] "Removed 41 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 8 row(s) with variable TFCELL" [1] "Removed 1 row(s) with LiCO2A spikes in them" [1] "TEMP: 565 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:09:01 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.7" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.94 co2off = 403.27 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.07 minutes" [1] "Average Cal: 7.29 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 3 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 3 4 263 272 0.7880637 0.7943271 0.7918911 2 15.49252 127.0170 1.199828 4 2 273 282 0.7950225 0.8012835 0.7988477 2 -13.94252 281.8425 1.200114 7 2 561 565 0.9968091 0.9995949 0.9988976 1 -13.70567 277.3919 1.200675 jfcv2 co2slp o2slp co2sd o2sd 3 1.336200 0.002917106 -1.5581773 0.007568714 6.300008 4 1.336439 -0.002084950 -0.1646352 0.005692251 4.774126 7 1.334998 0.001400472 -2.0716742 0.001406366 2.247529 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 389.597 co2l1 = 0.938 co2l0 = 0" [1] "co2l0 = -139.42 co2l1 = 0.206" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "14 out of 60 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "46 out of 506 1-min values rejected as stack air" [1] "45 out of 269 Line 1 1-min values rejected as stack air" [1] "1 out of 237 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"