[1] "2017-04-06 18:32:02 MDT"
[1] "1502"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1502/150214.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1502/150215.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1502/150216.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1502/150217.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1502/150218.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1502/150219.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1502/150220.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1502/150221.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1502/150222.html"  
[10] "/net/www/docs/homes/stephens/GO2/1502/150223.html"  
[11] "/net/www/docs/homes/stephens/GO2/1502/150224.html"  
[12] "/net/www/docs/homes/stephens/GO2/1502/150225.html"  
[13] "/net/www/docs/homes/stephens/GO2/1502/150226.html"  
[14] "/net/www/docs/homes/stephens/GO2/1502/150227.html"  
[15] "/net/www/docs/homes/stephens/GO2/1502/150228.html"  
[16] "/net/www/docs/homes/stephens/GO2/1502/150301.html"  
[17] "/net/www/docs/homes/stephens/GO2/1502/150303.html"  
[18] "/net/www/docs/homes/stephens/GO2/1502/150304.html"  
[19] "/net/www/docs/homes/stephens/GO2/1502/150305.html"  
[20] "/net/www/docs/homes/stephens/GO2/1502/150306.html"  
[21] "/net/www/docs/homes/stephens/GO2/1502/150307.html"  
[22] "/net/www/docs/homes/stephens/GO2/1502/150308.html"  
[23] "/net/www/docs/homes/stephens/GO2/1502/150309.html"  
[24] "/net/www/docs/homes/stephens/GO2/1502/150310.html"  
[25] "/net/www/docs/homes/stephens/GO2/1502/150311.html"  
[26] "/net/www/docs/homes/stephens/GO2/1502/150312.html"  
[27] "/net/www/docs/homes/stephens/GO2/1502/150313.html"  
[28] "/net/www/docs/homes/stephens/GO2/1502/150314.html"  
[29] "/net/www/docs/homes/stephens/GO2/1502/150315.html"  
[30] "/net/www/docs/homes/stephens/GO2/1502/150316.html"  
[31] "/net/www/docs/homes/stephens/GO2/1502/lmg_1502.html"
 [1] "/net/www/docs/homes/stephens/GO2/1502/150214.html"
 [2] "/net/www/docs/homes/stephens/GO2/1502/150215.html"
 [3] "/net/www/docs/homes/stephens/GO2/1502/150216.html"
 [4] "/net/www/docs/homes/stephens/GO2/1502/150217.html"
 [5] "/net/www/docs/homes/stephens/GO2/1502/150218.html"
 [6] "/net/www/docs/homes/stephens/GO2/1502/150219.html"
 [7] "/net/www/docs/homes/stephens/GO2/1502/150220.html"
 [8] "/net/www/docs/homes/stephens/GO2/1502/150221.html"
 [9] "/net/www/docs/homes/stephens/GO2/1502/150222.html"
[10] "/net/www/docs/homes/stephens/GO2/1502/150223.html"
[11] "/net/www/docs/homes/stephens/GO2/1502/150224.html"
[12] "/net/www/docs/homes/stephens/GO2/1502/150225.html"
[13] "/net/www/docs/homes/stephens/GO2/1502/150226.html"
[14] "/net/www/docs/homes/stephens/GO2/1502/150227.html"
[15] "/net/www/docs/homes/stephens/GO2/1502/150228.html"
[16] "/net/www/docs/homes/stephens/GO2/1502/150301.html"
[17] "/net/www/docs/homes/stephens/GO2/1502/150303.html"
[18] "/net/www/docs/homes/stephens/GO2/1502/150304.html"
[19] "/net/www/docs/homes/stephens/GO2/1502/150305.html"
[20] "/net/www/docs/homes/stephens/GO2/1502/150306.html"
[21] "/net/www/docs/homes/stephens/GO2/1502/150307.html"
[22] "/net/www/docs/homes/stephens/GO2/1502/150308.html"
[23] "/net/www/docs/homes/stephens/GO2/1502/150309.html"
[24] "/net/www/docs/homes/stephens/GO2/1502/150310.html"
[25] "/net/www/docs/homes/stephens/GO2/1502/150311.html"
[26] "/net/www/docs/homes/stephens/GO2/1502/150312.html"
[27] "/net/www/docs/homes/stephens/GO2/1502/150313.html"
[28] "/net/www/docs/homes/stephens/GO2/1502/150314.html"
[29] "/net/www/docs/homes/stephens/GO2/1502/150315.html"
[30] "/net/www/docs/homes/stephens/GO2/1502/150316.html"
[1] "150214" "150316"
 [1] "150214" "150215" "150216" "150217" "150218" "150219" "150220" "150221"
 [9] "150222" "150223" "150224" "150225" "150226" "150227" "150228" "150301"
[17] "150303" "150304" "150305" "150306" "150307" "150308" "150309" "150310"
[25] "150311" "150312" "150313" "150314" "150315" "150316"
[1] "000000" "999999"
[1] "150214_mr_proc.txt, 150214_cal_periods.txt, 150214_cal_param.txt,565jogs"
[1] "150215_mr_proc.txt, 150215_cal_periods.txt, 150215_cal_param.txt,1419jogs"
[1] "150216_mr_proc.txt, 150216_cal_periods.txt, 150216_cal_param.txt,1416jogs"
[1] "150217_mr_proc.txt, 150217_cal_periods.txt, 150217_cal_param.txt,1046jogs"
[1] "150218_mr_proc.txt, 150218_cal_periods.txt, 150218_cal_param.txt,88jogs"
[1] "150219_mr_proc.txt, 150219_cal_periods.txt, 150219_cal_param.txt,805jogs"
[1] "150220_mr_proc.txt, 150220_cal_periods.txt, 150220_cal_param.txt,1421jogs"
[1] "150221_mr_proc.txt, 150221_cal_periods.txt, 150221_cal_param.txt,1386jogs"
[1] "150222_mr_proc.txt, 150222_cal_periods.txt, 150222_cal_param.txt,1062jogs"
[1] "150223_mr_proc.txt, 150223_cal_periods.txt, 150223_cal_param.txt,1383jogs"
[1] "150224_mr_proc.txt, 150224_cal_periods.txt, 150224_cal_param.txt,1384jogs"
[1] "150225_mr_proc.txt, 150225_cal_periods.txt, 150225_cal_param.txt,1420jogs"
[1] "150226_mr_proc.txt, 150226_cal_periods.txt, 150226_cal_param.txt,1404jogs"
[1] "150227_mr_proc.txt, 150227_cal_periods.txt, 150227_cal_param.txt,1164jogs"
[1] "150228_mr_proc.txt, 150228_cal_periods.txt, 150228_cal_param.txt,1268jogs"
[1] "150301_mr_proc.txt, 150301_cal_periods.txt, 150301_cal_param.txt,1020jogs"
[1] "150303_mr_proc.txt, 150303_cal_periods.txt, 150303_cal_param.txt,723jogs"
[1] "150304_mr_proc.txt, 150304_cal_periods.txt, 150304_cal_param.txt,1425jogs"
[1] "150305_mr_proc.txt, 150305_cal_periods.txt, 150305_cal_param.txt,1399jogs"
[1] "150306_mr_proc.txt, 150306_cal_periods.txt, 150306_cal_param.txt,1373jogs"
[1] "150307_mr_proc.txt, 150307_cal_periods.txt, 150307_cal_param.txt,1334jogs"
[1] "150308_mr_proc.txt, 150308_cal_periods.txt, 150308_cal_param.txt,1368jogs"
[1] "150309_mr_proc.txt, 150309_cal_periods.txt, 150309_cal_param.txt,1322jogs"
[1] "150310_mr_proc.txt, 150310_cal_periods.txt, 150310_cal_param.txt,1384jogs"
[1] "150311_mr_proc.txt, 150311_cal_periods.txt, 150311_cal_param.txt,1433jogs"
[1] "150312_mr_proc.txt, 150312_cal_periods.txt, 150312_cal_param.txt,1415jogs"
[1] "150313_mr_proc.txt, 150313_cal_periods.txt, 150313_cal_param.txt,1429jogs"
[1] "150314_mr_proc.txt, 150314_cal_periods.txt, 150314_cal_param.txt,1363jogs"
[1] "150315_mr_proc.txt, 150315_cal_periods.txt, 150315_cal_param.txt,1375jogs"
[1] "150316_mr_proc.txt, 150316_cal_periods.txt, 150316_cal_param.txt,345jogs"
[1] "150214" "150316" "d045"   "d075"  
[1] "Calculating derived concentration values"
[1] "2017-04-06 18:33:47 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.848, ave o2scale2 = 0.764"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-04-06 18:34:22 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-04-06 18:35:11 MDT"
[1] "2017-04-06 18:35:22 MDT"
[1] "Reading in cylinder log"
Read 68 records
[1] "Finding cylinder IDs"
Read 420 records
[1] "position 1 cylinder CC339495 description: HS CO2 = 376.46 O2 = -483.8"
[1] "position 2 cylinder CA07671 description: MS CO2 = 393.12 O2 = -532.4"
[1] "position 3 cylinder CC339490 description: LS CO2 = 404.04 O2 = -643.1"
[1] "position 4 cylinder CC332564 description: LT CO2 = 393.91 O2 = -579.3"
[1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.32 O2 = -763"
[1] "Plotting jog shapes"
[1] "1502 Valve transient for  Line 1 after Line 2 = 8.95 , 7.24 , 3.86 , 0.23 , 0.11 n = 6"
[1] "1502 Valve transient for  Line 1 after Cal = -0.31 , -0.23 , -0.02 , 0.01 , 0.02 n = 104"
[1] "1502 Valve transient for  Line 2 after Line 1 = 15.19 , 10.31 , 2.81 , 0.07 , 0.05 n = 6"
[1] "1502 Valve transient for  Line 2 after Cal = -0.19 , -0.1 , 0.03 , 0.04 , 0.03 n = 6"
[1] "1502 Valve transient for  Line 1 after HS = -1.04 , -0.52 , 0.02 , 0.02 , 0.02 n = 35"
[1] "1502 Valve transient for  Line 1 after MS = -0.11 , -0.06 , 0.01 , 0 , 0.01 n = 47"
[1] "1502 Valve transient for  Line 1 after LT = -1.51 , -1.08 , -0.33 , 0.01 , 0.03 n = 22"
[1] "1502 Valve transient for  Line 2 after HS = -1.14 , -0.58 , -0.02 , 0 , 0 n = 2"
[1] "1502 Valve transient for  Line 2 after MS = -0.11 , -0.04 , 0.03 , 0.04 , 0.03 n = 4"
[1] "1502 Valve transient for  Line 2 after LT = -24.44 , -23.92 , -23.01 , -22.61 , -22.6 n = 1"
[1] "1502 Valve transient for  HS after Line 1 = 1.03 , 0.52 , 0 , 0 , 0 n = 45"
[1] "1502 Valve transient for  HS after Line 2 = 1.04 , 0.53 , 0.01 , 0.01 , 0 n = 5"
[1] "1502 Valve transient for  HS after MS = 2.52 , 1.26 , 0 , 0 , 0.01 n = 3"
[1] "1502 Valve transient for  HS after LS = 4.28 , 2.15 , 0.02 , 0 , 0 n = 51"
[1] "1502 Valve transient for  MS after Line 1 = 0 , 0 , -0.01 , 0 , 0 n = 1"
[1] "1502 Valve transient for  MS after HS = -0.01 , -0.01 , 0 , 0 , NA n = 1"
[1] "1502 Valve transient for  MS after LS = 1.67 , 0.82 , -0.02 , -0.02 , -0.01 n = 36"
[1] "1502 Valve transient for  MS after LT = 1.05 , 0.52 , -0.02 , -0.01 , -0.01 n = 12"
[1] "1502 Valve transient for  LS after Line 1 = -1.47 , -0.74 , -0.01 , 0 , 0 n = 43"
[1] "1502 Valve transient for  LS after Line 2 = -1.42 , -0.72 , 0 , 0 , 0.01 n = 5"
[1] "1502 Valve transient for  LS after HS = -4.32 , -2.17 , -0.02 , -0.01 , 0 n = 56"
[1] "1502 Valve transient for  LT after Line 1 = 0.31 , 0.24 , 0.14 , 0.09 , 0.05 n = 1"
[1] "1502 Valve transient for  LT after HS = -0.87 , -0.43 , 0.03 , 0.03 , 0.02 n = 15"
[1] "1502 Valve transient for  LT after LS = 0.59 , 0.32 , 0.03 , 0.03 , 0.02 n = 13"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "427 out of 5175 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "4748 out of 30943 1-min values rejected as stack air"
[1] "4323 out of 28097 Line 1 1-min values rejected as stack air"
[1] "425 out of 2846 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1502loxy.d045"
[1] "LMG1502loxy.d046"
[1] "LMG1502loxy.d047"
[1] "LMG1502loxy.d048"
[1] "LMG1502loxy.d049"
[1] "LMG1502loxy.d050"
[1] "LMG1502loxy.d051"
[1] "LMG1502loxy.d052"
[1] "LMG1502loxy.d053"
[1] "LMG1502loxy.d054"
[1] "LMG1502loxy.d055"
[1] "LMG1502loxy.d056"
[1] "LMG1502loxy.d057"
[1] "LMG1502loxy.d058"
[1] "LMG1502loxy.d059"
[1] "LMG1502loxy.d060"
[1] "LMG1502loxy.d061"
[1] "LMG1502loxy.d062"
[1] "LMG1502loxy.d063"
[1] "LMG1502loxy.d064"
[1] "LMG1502loxy.d065"
[1] "LMG1502loxy.d066"
[1] "LMG1502loxy.d067"
[1] "LMG1502loxy.d068"
[1] "LMG1502loxy.d069"
[1] "LMG1502loxy.d070"
[1] "LMG1502loxy.d071"
[1] "LMG1502loxy.d072"
[1] "LMG1502loxy.d073"
[1] "LMG1502loxy.d074"
[1] "LMG1502loxy.d075"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,]  92.5 0.6410256
 [2,]  97.5 0.6410256
 [3,] 102.5 1.2820513
 [4,] 112.5 0.6410256
 [5,] 117.5 0.6410256
 [6,] 122.5 0.6410256
 [7,] 142.5 1.2820513
 [8,] 147.5 0.6410256
 [9,] 152.5 0.6410256
[10,] 157.5 0.6410256
[11,] 162.5 0.6410256
[12,] 187.5 1.2820513
[13,] 192.5 1.2820513
[14,] 197.5 3.2051282
[15,] 202.5 1.9230769
[16,] 207.5 1.2820513
[17,] 212.5 1.9230769
[18,] 217.5 7.6923077
[19,] 222.5 4.4871795
[20,] 227.5 0.6410256
[21,] 232.5 2.5641026
[22,] 237.5 1.9230769
[23,] 247.5 0.6410256
[24,] 252.5 1.2820513
[25,] 267.5 0.6410256
[26,] 272.5 0.6410256
[27,] 277.5 1.2820513
[28,] 282.5 0.6410256
[29,] 292.5 0.6410256
[30,] 297.5 0.6410256
[31,] 302.5 1.9230769
[32,] 307.5 2.5641026
[33,] 312.5 2.5641026
[34,] 317.5 3.2051282
[35,] 322.5 3.2051282
[36,] 327.5 7.6923077
[37,] 332.5 5.7692308
[38,] 337.5 3.2051282
[39,] 342.5 1.9230769
[40,] 347.5 0.6410256
[41,] 352.5 1.2820513
[42,] 357.5 0.6410256
[43,] 367.5 0.6410256
[44,] 382.5 0.6410256
[45,] 387.5 0.6410256
[46,] 392.5 1.2820513
[47,] 397.5 1.2820513
[48,] 402.5 1.2820513
[49,] 407.5 0.6410256
[50,] 412.5 0.6410256
[51,] 427.5 0.6410256
[52,] 437.5 0.6410256
[53,] 447.5 0.6410256
       [,1]      [,2]
 [1,] 112.5 0.6410256
 [2,] 187.5 3.8461538
 [3,] 192.5 3.2051282
 [4,] 202.5 0.6410256
 [5,] 212.5 0.6410256
 [6,] 217.5 0.6410256
 [7,] 222.5 1.2820513
 [8,] 232.5 0.6410256
 [9,] 252.5 0.6410256
[10,] 342.5 0.6410256
[11,] 347.5 0.6410256
     [,1] [,2]
     [,1] [,2]
[1] "making cruise html"
[1] "2017-04-06 18:36:37 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"