[1] "2025-04-29 23:04:47 MDT" [1] "1501" "150207" "d038" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150207a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 72013 63 [1] 72013 [1] 72013 [1] "testing skipping spike filter" [1] 72013 [1] 72013 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:04:51 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.831, ave o2scale2 = 0.751" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "61 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.831, ave o2scale2 = 0.751" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "61 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:04:51 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:04:51 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:05:06 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:05:07 MDT" [1] "reading in recalculated plot titles" [1] "Removed 62 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1138 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:05:10 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.7" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.938 co2off = 387.79 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.86 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 3 [3,] 4 6 [4,] 7 8 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 3 3 12 0.002347222 0.008607002 0.007563751 1 2.582062 212.2597 4 4 271 279 0.190910909 0.196478443 0.194389298 2 12.484607 134.5276 5 2 280 289 0.197173785 0.203435966 0.200999309 2 -16.939781 281.6219 7 2 535 544 0.398943519 0.405206076 0.402772096 3 -16.895648 282.9786 8 4 545 554 0.405901678 0.412168924 0.409731123 3 12.533484 135.0718 9 3 555 564 0.412864149 0.419123293 0.418080230 3 2.681211 210.9749 11 4 817 826 0.607755295 0.614014931 0.611580501 2 12.522656 134.2772 12 2 827 833 0.616800868 0.620973524 0.619582679 2 -16.916450 280.6143 13 5 834 843 0.621668981 0.627940394 0.626895233 NA 1.488594 191.0819 15 2 1112 1121 0.816515104 0.822778646 0.820343862 2 -16.981281 279.1119 16 4 1122 1131 0.823474074 0.829737963 0.827303711 2 12.446555 131.6323 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.200531 1.327591 -0.0002629120 0.3266316 0.0015740643 1.235508 4 1.202781 1.330337 0.0003339293 -1.2193262 0.0012622908 3.689702 5 1.203150 1.330720 -0.0002687624 -0.2964144 0.0037304550 1.375513 7 1.206063 1.334055 0.0023499677 -0.2413339 0.0065360383 1.430786 8 1.206159 1.334183 0.0025373816 -0.9575203 0.0091807100 3.295325 9 1.206089 1.334140 0.0006202449 -0.1945733 0.0038072912 1.600300 11 1.206049 1.334056 -0.0006582180 -0.7329559 0.0042328963 2.558556 12 1.205486 1.333512 0.0001560148 1.3765079 0.0006455981 3.098719 13 1.205292 1.333224 0.0015602896 -2.5679158 0.0011048543 3.443680 15 1.202908 1.330410 -0.0023328459 0.3602582 0.0064360695 3.392838 16 1.202896 1.330398 0.0026677497 0.1245823 0.0078380965 2.871131 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 392.074 co2l1 = 0.936 co2l0 = -1.286" [1] "co2l0 = -141.8 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "30 out of 30 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 978 1-min values rejected as stack air" [1] "0 out of 978 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"