[1] "2025-04-29 23:04:13 MDT" [1] "1501" "150206" "d037" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150206a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:04:17 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.835, ave o2scale2 = 0.755" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "47 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.835, ave o2scale2 = 0.755" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "47 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:04:18 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:04:18 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:04:35 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:04:37 MDT" [1] "reading in recalculated plot titles" [1] "Removed 47 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1388 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:04:42 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.7" [1] "position 2 cylinder CB08905 description: MS CO2 = 395 O2 = -541.2" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.938 co2off = 387.72 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.66 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 205 213 0.1471655 0.1527328 0.1506449 3 -17.027348 278.5454 3 4 214 223 0.1534282 0.1596911 0.1572563 3 12.421219 132.6686 4 3 224 233 0.1603866 0.1666494 0.1656063 3 2.564812 215.4339 6 4 502 511 0.3551831 0.3614459 0.3590114 2 12.438609 135.7750 7 2 512 521 0.3621413 0.3684042 0.3659701 2 -16.999961 279.5398 8 5 522 531 0.3691032 0.3753668 0.3743215 NA 1.426094 191.0918 10 2 797 806 0.5639272 0.5701865 0.5677526 3 -16.942406 281.6565 11 4 807 816 0.5708820 0.5771419 0.5747077 3 12.494203 134.3747 12 3 817 826 0.5778372 0.5841071 0.5830621 3 2.629211 216.9223 14 4 1091 1100 0.7727197 0.7789826 0.7765479 2 12.468734 134.9295 15 2 1101 1110 0.7796780 0.7859409 0.7835067 2 -16.972680 284.8724 17 2 1363 1371 0.9821702 0.9877385 0.9856501 2 -17.028857 273.9099 18 4 1372 1381 0.9884339 0.9946968 0.9922618 2 12.424797 134.8802 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.195996 1.322662 0.0007273795 0.40611680 0.0072865331 4.2154287 3 1.195821 1.322427 0.0025065757 -1.74917093 0.0065902051 4.7820200 4 1.195896 1.322509 0.0015348158 3.67586387 0.0045237469 5.1265165 6 1.197335 1.323991 0.0033404634 -0.68455255 0.0085032655 2.0366639 7 1.197540 1.324250 0.0002247931 0.94361421 0.0047911676 4.0943745 8 1.197579 1.324290 -0.0004363364 0.08010554 0.0003093592 0.5031847 10 1.200253 1.327355 -0.0009732480 -0.53055701 0.0030454152 4.2867719 11 1.200280 1.327383 0.0044573857 0.03964889 0.0123712905 3.2622593 12 1.200302 1.327438 -0.0006834429 3.30335375 0.0035813158 4.4382036 14 1.200112 1.327212 0.0023285768 0.66319141 0.0068085875 2.4528487 15 1.200261 1.327381 -0.0026781558 -1.44796692 0.0104971530 4.2259614 17 1.199519 1.326465 -0.0003695153 0.82739033 0.0023042404 4.7547658 18 1.199843 1.326782 0.0024167206 1.06198308 0.0074984932 3.2573108 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 392.566 co2l1 = 0.938 co2l0 = 0.005" [1] "co2l0 = -143.32 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "91 out of 100 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "9 out of 1206 1-min values rejected as stack air" [1] "9 out of 1206 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"